miRNA display CGI


Results 41 - 60 of 323 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29106 5' -57.6 NC_006146.1 + 21164 0.67 0.85741
Target:  5'- aCCCaagcgaaGCCACCGGaccUUCCAGGc-CCGGg -3'
miRNA:   3'- cGGG-------UGGUGGUCa--GAGGUCCuuGGCC- -5'
29106 5' -57.6 NC_006146.1 + 21775 0.71 0.659825
Target:  5'- cGCCCGCcCACCAuUCUaagcccagCGGGAuGCCGGg -3'
miRNA:   3'- -CGGGUG-GUGGUcAGAg-------GUCCU-UGGCC- -5'
29106 5' -57.6 NC_006146.1 + 22659 0.67 0.842823
Target:  5'- uGCCUcCC-CgGGUC-CCAGGccAGCCGGa -3'
miRNA:   3'- -CGGGuGGuGgUCAGaGGUCC--UUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 22791 0.71 0.630054
Target:  5'- cGCCCGCCcgGCCAGagacUCUCCcucgcggacAGGGGCCu- -3'
miRNA:   3'- -CGGGUGG--UGGUC----AGAGG---------UCCUUGGcc -5'
29106 5' -57.6 NC_006146.1 + 23482 0.66 0.899391
Target:  5'- cGCCCACaCGuCCAGgggucCUCgAGGAAgaGGc -3'
miRNA:   3'- -CGGGUG-GU-GGUCa----GAGgUCCUUggCC- -5'
29106 5' -57.6 NC_006146.1 + 23534 0.7 0.708919
Target:  5'- uGUCCACUGcCCAGUUccccCCAGGAGCCc- -3'
miRNA:   3'- -CGGGUGGU-GGUCAGa---GGUCCUUGGcc -5'
29106 5' -57.6 NC_006146.1 + 24237 0.66 0.879019
Target:  5'- cGCCCACCGCCcgggaggguuGUUUucugaccauggacCCAGGccucgugacccuGGCCGGg -3'
miRNA:   3'- -CGGGUGGUGGu---------CAGA-------------GGUCC------------UUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 24242 0.67 0.85741
Target:  5'- aCCCaagcgaaGCCACCGGaccUUCCAGGc-CCGGg -3'
miRNA:   3'- cGGG-------UGGUGGUCa--GAGGUCCuuGGCC- -5'
29106 5' -57.6 NC_006146.1 + 25385 0.69 0.753684
Target:  5'- cGUCCGCCGCggCaagggcuacgucagAGUCUCCGuGGAcacGCCGGa -3'
miRNA:   3'- -CGGGUGGUG--G--------------UCAGAGGU-CCU---UGGCC- -5'
29106 5' -57.6 NC_006146.1 + 25673 0.73 0.521398
Target:  5'- cCCCACCAacCCGGUCUucuacgucuacccUCAGGAguggaaGCCGGg -3'
miRNA:   3'- cGGGUGGU--GGUCAGA-------------GGUCCU------UGGCC- -5'
29106 5' -57.6 NC_006146.1 + 25737 0.67 0.842823
Target:  5'- uGCCUcCC-CgGGUC-CCAGGccAGCCGGa -3'
miRNA:   3'- -CGGGuGGuGgUCAGaGGUCC--UUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 25869 0.71 0.630054
Target:  5'- cGCCCGCCcgGCCAGagacUCUCCcucgcggacAGGGGCCu- -3'
miRNA:   3'- -CGGGUGG--UGGUC----AGAGG---------UCCUUGGcc -5'
29106 5' -57.6 NC_006146.1 + 26560 0.66 0.899391
Target:  5'- cGCCCACaCGuCCAGgggucCUCgAGGAAgaGGc -3'
miRNA:   3'- -CGGGUG-GU-GGUCa----GAGgUCCUUggCC- -5'
29106 5' -57.6 NC_006146.1 + 26612 0.7 0.708919
Target:  5'- uGUCCACUGcCCAGUUccccCCAGGAGCCc- -3'
miRNA:   3'- -CGGGUGGU-GGUCAGa---GGUCCUUGGcc -5'
29106 5' -57.6 NC_006146.1 + 27320 0.67 0.85741
Target:  5'- aCCCaagcgaaGCCACCGGaccUUCCAGGc-CCGGg -3'
miRNA:   3'- cGGG-------UGGUGGUCa--GAGGUCCuuGGCC- -5'
29106 5' -57.6 NC_006146.1 + 27596 0.67 0.834881
Target:  5'- cGCCUuCCAagaCAGacUCUCCGGGuccACUGGg -3'
miRNA:   3'- -CGGGuGGUg--GUC--AGAGGUCCu--UGGCC- -5'
29106 5' -57.6 NC_006146.1 + 28815 0.67 0.842823
Target:  5'- uGCCUcCC-CgGGUC-CCAGGccAGCCGGa -3'
miRNA:   3'- -CGGGuGGuGgUCAGaGGUCC--UUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 28946 0.71 0.630054
Target:  5'- cGCCCGCCcgGCCAGagacUCUCCcucgcggacAGGGGCCu- -3'
miRNA:   3'- -CGGGUGG--UGGUC----AGAGG---------UCCUUGGcc -5'
29106 5' -57.6 NC_006146.1 + 29638 0.66 0.899391
Target:  5'- cGCCCACaCGuCCAGgggucCUCgAGGAAgaGGc -3'
miRNA:   3'- -CGGGUG-GU-GGUCa----GAGgUCCUUggCC- -5'
29106 5' -57.6 NC_006146.1 + 29690 0.7 0.708919
Target:  5'- uGUCCACUGcCCAGUUccccCCAGGAGCCc- -3'
miRNA:   3'- -CGGGUGGU-GGUCAGa---GGUCCUUGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.