miRNA display CGI


Results 21 - 40 of 323 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29106 5' -57.6 NC_006146.1 + 13425 0.67 0.842823
Target:  5'- uGCCUcCC-CgGGUC-CCAGGccAGCCGGa -3'
miRNA:   3'- -CGGGuGGuGgUCAGaGGUCC--UUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 13547 0.68 0.774833
Target:  5'- -aCCugCugCAGgcgCCGGGcGCCGGg -3'
miRNA:   3'- cgGGugGugGUCagaGGUCCuUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 13557 0.71 0.630054
Target:  5'- cGCCCGCCcgGCCAGagacUCUCCcucgcggacAGGGGCCu- -3'
miRNA:   3'- -CGGGUGG--UGGUC----AGAGG---------UCCUUGGcc -5'
29106 5' -57.6 NC_006146.1 + 13978 0.66 0.899391
Target:  5'- aGCCCgucagcGCCGCCA--C-CCAGGccucGGCCGGg -3'
miRNA:   3'- -CGGG------UGGUGGUcaGaGGUCC----UUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 14248 0.66 0.899391
Target:  5'- cGCCCACaCGuCCAGgggucCUCgAGGAAgaGGc -3'
miRNA:   3'- -CGGGUG-GU-GGUCa----GAGgUCCUUggCC- -5'
29106 5' -57.6 NC_006146.1 + 14300 0.7 0.708919
Target:  5'- uGUCCACUGcCCAGUUccccCCAGGAGCCc- -3'
miRNA:   3'- -CGGGUGGU-GGUCAGa---GGUCCUUGGcc -5'
29106 5' -57.6 NC_006146.1 + 14690 0.67 0.834881
Target:  5'- gGCCCgcgucuccugcaACCACCuggcGGUC-CCGgugaauucGGAGCCGGu -3'
miRNA:   3'- -CGGG------------UGGUGG----UCAGaGGU--------CCUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 15008 0.67 0.85741
Target:  5'- aCCCaagcgaaGCCACCGGaccUUCCAGGc-CCGGg -3'
miRNA:   3'- cGGG-------UGGUGGUCa--GAGGUCCuuGGCC- -5'
29106 5' -57.6 NC_006146.1 + 15016 0.68 0.818483
Target:  5'- uGCCCugUuuGCCAGggaggggCgccuggCCAGGGcccGCCGGg -3'
miRNA:   3'- -CGGGugG--UGGUCa------Ga-----GGUCCU---UGGCC- -5'
29106 5' -57.6 NC_006146.1 + 16503 0.67 0.842823
Target:  5'- uGCCUcCC-CgGGUC-CCAGGccAGCCGGa -3'
miRNA:   3'- -CGGGuGGuGgUCAGaGGUCC--UUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 16635 0.71 0.630054
Target:  5'- cGCCCGCCcgGCCAGagacUCUCCcucgcggacAGGGGCCu- -3'
miRNA:   3'- -CGGGUGG--UGGUC----AGAGG---------UCCUUGGcc -5'
29106 5' -57.6 NC_006146.1 + 17326 0.66 0.899391
Target:  5'- cGCCCACaCGuCCAGgggucCUCgAGGAAgaGGc -3'
miRNA:   3'- -CGGGUG-GU-GGUCa----GAGgUCCUUggCC- -5'
29106 5' -57.6 NC_006146.1 + 17378 0.7 0.708919
Target:  5'- uGUCCACUGcCCAGUUccccCCAGGAGCCc- -3'
miRNA:   3'- -CGGGUGGU-GGUCAGa---GGUCCUUGGcc -5'
29106 5' -57.6 NC_006146.1 + 18086 0.67 0.85741
Target:  5'- aCCCaagcgaaGCCACCGGaccUUCCAGGc-CCGGg -3'
miRNA:   3'- cGGG-------UGGUGGUCa--GAGGUCCuuGGCC- -5'
29106 5' -57.6 NC_006146.1 + 18373 0.66 0.893044
Target:  5'- uGCUCACC-CUGGUC-CUGGuGGCCGGg -3'
miRNA:   3'- -CGGGUGGuGGUCAGaGGUCcUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 19581 0.67 0.842823
Target:  5'- uGCCUcCC-CgGGUC-CCAGGccAGCCGGa -3'
miRNA:   3'- -CGGGuGGuGgUCAGaGGUCC--UUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 19713 0.71 0.630054
Target:  5'- cGCCCGCCcgGCCAGagacUCUCCcucgcggacAGGGGCCu- -3'
miRNA:   3'- -CGGGUGG--UGGUC----AGAGG---------UCCUUGGcc -5'
29106 5' -57.6 NC_006146.1 + 20404 0.66 0.899391
Target:  5'- cGCCCACaCGuCCAGgggucCUCgAGGAAgaGGc -3'
miRNA:   3'- -CGGGUG-GU-GGUCa----GAGgUCCUUggCC- -5'
29106 5' -57.6 NC_006146.1 + 20456 0.7 0.708919
Target:  5'- uGUCCACUGcCCAGUUccccCCAGGAGCCc- -3'
miRNA:   3'- -CGGGUGGU-GGUCAGa---GGUCCUUGGcc -5'
29106 5' -57.6 NC_006146.1 + 20592 0.67 0.842823
Target:  5'- cGCCCgggcgaggACUACgAGUcCUUCAGGcucACCGGg -3'
miRNA:   3'- -CGGG--------UGGUGgUCA-GAGGUCCu--UGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.