miRNA display CGI


Results 1 - 20 of 323 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29106 5' -57.6 NC_006146.1 + 858 0.69 0.728184
Target:  5'- gGCCCuCC-CCGacaUCCAGGGACUGGc -3'
miRNA:   3'- -CGGGuGGuGGUcagAGGUCCUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 1246 0.69 0.727228
Target:  5'- cGCCCGCCAcgcCCAGcugucauUCUCCccgccaacGGGAGCagaGGg -3'
miRNA:   3'- -CGGGUGGU---GGUC-------AGAGG--------UCCUUGg--CC- -5'
29106 5' -57.6 NC_006146.1 + 1790 0.69 0.728184
Target:  5'- gGCCCuCC-CCGacaUCCAGGGACUGGc -3'
miRNA:   3'- -CGGGuGGuGGUcagAGGUCCUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 2178 0.69 0.727228
Target:  5'- cGCCCGCCAcgcCCAGcugucauUCUCCccgccaacGGGAGCagaGGg -3'
miRNA:   3'- -CGGGUGGU---GGUC-------AGAGG--------UCCUUGg--CC- -5'
29106 5' -57.6 NC_006146.1 + 2722 0.69 0.728184
Target:  5'- gGCCCuCC-CCGacaUCCAGGGACUGGc -3'
miRNA:   3'- -CGGGuGGuGGUcagAGGUCCUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 2921 0.71 0.630054
Target:  5'- cGCCCACCAU--GUUUaCCGGGgAGCUGGg -3'
miRNA:   3'- -CGGGUGGUGguCAGA-GGUCC-UUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 3110 0.69 0.727228
Target:  5'- cGCCCGCCAcgcCCAGcugucauUCUCCccgccaacGGGAGCagaGGg -3'
miRNA:   3'- -CGGGUGGU---GGUC-------AGAGG--------UCCUUGg--CC- -5'
29106 5' -57.6 NC_006146.1 + 3654 0.69 0.728184
Target:  5'- gGCCCuCC-CCGacaUCCAGGGACUGGc -3'
miRNA:   3'- -CGGGuGGuGGUcagAGGUCCUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 8502 0.67 0.865542
Target:  5'- uGCCCACCACUuGUUacucCCAGGGcaaaGCCc- -3'
miRNA:   3'- -CGGGUGGUGGuCAGa---GGUCCU----UGGcc -5'
29106 5' -57.6 NC_006146.1 + 8511 0.66 0.879708
Target:  5'- gGCCCACCGg-GGUC-CCGGGcGCgGGc -3'
miRNA:   3'- -CGGGUGGUggUCAGaGGUCCuUGgCC- -5'
29106 5' -57.6 NC_006146.1 + 8849 0.7 0.676626
Target:  5'- aCCCACCcccgcgguggaACCGGUuucccacagugccaCUCCAccguGGAGCCGGu -3'
miRNA:   3'- cGGGUGG-----------UGGUCA--------------GAGGU----CCUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 8919 0.66 0.899391
Target:  5'- aUCCACCguggaGCCGGUCUCCcacGGGGCg-- -3'
miRNA:   3'- cGGGUGG-----UGGUCAGAGGu--CCUUGgcc -5'
29106 5' -57.6 NC_006146.1 + 8985 0.66 0.899391
Target:  5'- aUCCACCguggaGCCGGUCUCCcacGGGGCg-- -3'
miRNA:   3'- cGGGUGG-----UGGUCAGAGGu--CCUUGgcc -5'
29106 5' -57.6 NC_006146.1 + 9017 0.68 0.801448
Target:  5'- uGCCCAaaagggaaGCCgGGUCUCCcaGGGAGCCu- -3'
miRNA:   3'- -CGGGUgg------UGG-UCAGAGG--UCCUUGGcc -5'
29106 5' -57.6 NC_006146.1 + 9052 0.69 0.76571
Target:  5'- aUCCACCguggaGCCGGUCUCCcacGGGGCgUGGc -3'
miRNA:   3'- cGGGUGG-----UGGUCAGAGGu--CCUUG-GCC- -5'
29106 5' -57.6 NC_006146.1 + 9084 0.68 0.801448
Target:  5'- nGCCCAaaaggaaaGCCgGGUCUCCcaGGGAGCCu- -3'
miRNA:   3'- -CGGGUgg------UGG-UCAGAGG--UCCUUGGcc -5'
29106 5' -57.6 NC_006146.1 + 9119 0.66 0.879708
Target:  5'- aUCCACCguggaGCCGGUCUCCcacGGGGCguugccucuuuCGGg -3'
miRNA:   3'- cGGGUGG-----UGGUCAGAGGu--CCUUG-----------GCC- -5'
29106 5' -57.6 NC_006146.1 + 11972 0.67 0.850584
Target:  5'- cGCCUuuACCugCAGUUcugCCAGGGGCa-- -3'
miRNA:   3'- -CGGG--UGGugGUCAGa--GGUCCUUGgcc -5'
29106 5' -57.6 NC_006146.1 + 12670 0.68 0.778449
Target:  5'- gGgCCACUACCAGacgcugugcaccaaCUUCAGGAGCCuGGc -3'
miRNA:   3'- -CgGGUGGUGGUCa-------------GAGGUCCUUGG-CC- -5'
29106 5' -57.6 NC_006146.1 + 13227 0.71 0.637007
Target:  5'- gGCCUgcgGCCAgacCCAGUUcuacaucagccuggUCCAGGGGCUGGu -3'
miRNA:   3'- -CGGG---UGGU---GGUCAG--------------AGGUCCUUGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.