miRNA display CGI


Results 1 - 20 of 323 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29106 5' -57.6 NC_006146.1 + 130241 1.13 0.001483
Target:  5'- aGCCCACCACCAGUCUCCAGGAACCGGg -3'
miRNA:   3'- -CGGGUGGUGGUCAGAGGUCCUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 136088 0.75 0.436311
Target:  5'- gGUCCGCUGcCCGGUCcuggagcucggggCCGGGGGCCGGg -3'
miRNA:   3'- -CGGGUGGU-GGUCAGa------------GGUCCUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 136274 0.75 0.436311
Target:  5'- gGUCCGCUGcCCGGUCcuggagcucggggCCGGGGGCCGGg -3'
miRNA:   3'- -CGGGUGGU-GGUCAGa------------GGUCCUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 46975 0.65 0.903705
Target:  5'- gGCCCgGCCGCCg----CCAGGAauugcgcccgucggACCGGc -3'
miRNA:   3'- -CGGG-UGGUGGucagaGGUCCU--------------UGGCC- -5'
29106 5' -57.6 NC_006146.1 + 151931 0.76 0.357482
Target:  5'- gGCCCuGCCGCCc-UCUCUAGGGGCCGc -3'
miRNA:   3'- -CGGG-UGGUGGucAGAGGUCCUUGGCc -5'
29106 5' -57.6 NC_006146.1 + 68505 0.75 0.405571
Target:  5'- cGCCCcagggacagauACCACCAG-CUCCccgAGGAcCCGGa -3'
miRNA:   3'- -CGGG-----------UGGUGGUCaGAGG---UCCUuGGCC- -5'
29106 5' -57.6 NC_006146.1 + 137575 0.75 0.429364
Target:  5'- gGUCCGCUGcCCGGUCcuggagcucgggCCGGGGGCCGGg -3'
miRNA:   3'- -CGGGUGGU-GGUCAGa-----------GGUCCUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 135159 0.75 0.436311
Target:  5'- gGUCCGCUGcCCGGUCcuggagcucggggCCGGGGGCCGGg -3'
miRNA:   3'- -CGGGUGGU-GGUCAGa------------GGUCCUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 135438 0.75 0.436311
Target:  5'- gGUCCGCUGcCCGGUCcuggagcucggggCCGGGGGCCGGg -3'
miRNA:   3'- -CGGGUGGU-GGUCAGa------------GGUCCUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 135995 0.75 0.436311
Target:  5'- gGUCCGCUGcCCGGUCcuggagcucggggCCGGGGGCCGGg -3'
miRNA:   3'- -CGGGUGGU-GGUCAGa------------GGUCCUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 135624 0.75 0.436311
Target:  5'- gGUCCGCUGcCCGGUCcuggagcucggggCCGGGGGCCGGg -3'
miRNA:   3'- -CGGGUGGU-GGUCAGa------------GGUCCUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 135345 0.75 0.436311
Target:  5'- gGUCCGCUGcCCGGUCcuggagcucggggCCGGGGGCCGGg -3'
miRNA:   3'- -CGGGUGGU-GGUCAGa------------GGUCCUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 56600 0.86 0.09292
Target:  5'- aGCCCGCCGCCGGUCUCCuc--GCCGGc -3'
miRNA:   3'- -CGGGUGGUGGUCAGAGGuccuUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 135809 0.75 0.436311
Target:  5'- gGUCCGCUGcCCGGUCcuggagcucggggCCGGGGGCCGGg -3'
miRNA:   3'- -CGGGUGGU-GGUCAGa------------GGUCCUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 54895 0.77 0.313535
Target:  5'- gGUCCGCUcgcgccgucugGCCGGcCUUCAGGGACCGGc -3'
miRNA:   3'- -CGGGUGG-----------UGGUCaGAGGUCCUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 135252 0.75 0.436311
Target:  5'- gGUCCGCUGcCCGGUCcuggagcucggggCCGGGGGCCGGg -3'
miRNA:   3'- -CGGGUGGU-GGUCAGa------------GGUCCUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 135902 0.75 0.436311
Target:  5'- gGUCCGCUGcCCGGUCcuggagcucggggCCGGGGGCCGGg -3'
miRNA:   3'- -CGGGUGGU-GGUCAGa------------GGUCCUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 136181 0.75 0.436311
Target:  5'- gGUCCGCUGcCCGGUCcuggagcucggggCCGGGGGCCGGg -3'
miRNA:   3'- -CGGGUGGU-GGUCAGa------------GGUCCUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 150428 0.77 0.320567
Target:  5'- aGUCCACCACCAG-CaCCGGGGaguuguagaaGCCGGa -3'
miRNA:   3'- -CGGGUGGUGGUCaGaGGUCCU----------UGGCC- -5'
29106 5' -57.6 NC_006146.1 + 33306 0.75 0.413129
Target:  5'- uGCgCCGCCGCuCGGUCcuggggcUCCGGGGuCCGGg -3'
miRNA:   3'- -CG-GGUGGUG-GUCAG-------AGGUCCUuGGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.