miRNA display CGI


Results 1 - 20 of 323 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29106 5' -57.6 NC_006146.1 + 9119 0.66 0.879708
Target:  5'- aUCCACCguggaGCCGGUCUCCcacGGGGCguugccucuuuCGGg -3'
miRNA:   3'- cGGGUGG-----UGGUCAGAGGu--CCUUG-----------GCC- -5'
29106 5' -57.6 NC_006146.1 + 74471 0.66 0.895609
Target:  5'- gGCCCACgauggccuugagcggCGCU-GUgUUCAGGAGCUGGc -3'
miRNA:   3'- -CGGGUG---------------GUGGuCAgAGGUCCUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 18373 0.66 0.893044
Target:  5'- uGCUCACC-CUGGUC-CUGGuGGCCGGg -3'
miRNA:   3'- -CGGGUGGuGGUCAGaGGUCcUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 69743 0.66 0.889133
Target:  5'- aGCCCagguaaagguuggagACCACCGG-CUUCAGGuaaaaGACCa- -3'
miRNA:   3'- -CGGG---------------UGGUGGUCaGAGGUCC-----UUGGcc -5'
29106 5' -57.6 NC_006146.1 + 136886 0.66 0.887148
Target:  5'- cGCCCGCCugCcccgacccccccccuGcCuUCCAGGugcACCGGa -3'
miRNA:   3'- -CGGGUGGugGu--------------CaG-AGGUCCu--UGGCC- -5'
29106 5' -57.6 NC_006146.1 + 124341 0.66 0.886482
Target:  5'- cGCaCGCCACCcugaucGcCUCCAGGAAUCa- -3'
miRNA:   3'- -CGgGUGGUGGu-----CaGAGGUCCUUGGcc -5'
29106 5' -57.6 NC_006146.1 + 118195 0.66 0.886482
Target:  5'- gGCCgGCCGCCcccugacCUCCcgcccGGAGCUGGa -3'
miRNA:   3'- -CGGgUGGUGGuca----GAGGu----CCUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 39364 0.66 0.886482
Target:  5'- uCCCACCACCAaacGUC-CCAcucGGcgcCCGGu -3'
miRNA:   3'- cGGGUGGUGGU---CAGaGGU---CCuu-GGCC- -5'
29106 5' -57.6 NC_006146.1 + 91268 0.66 0.885814
Target:  5'- gGCUCGCCGgccugugacCCuGUCcCCGGGAcgagcucACCGGu -3'
miRNA:   3'- -CGGGUGGU---------GGuCAGaGGUCCU-------UGGCC- -5'
29106 5' -57.6 NC_006146.1 + 104167 0.66 0.899391
Target:  5'- uGCCCACCcCCuGaCUCCGaGAACaUGGa -3'
miRNA:   3'- -CGGGUGGuGGuCaGAGGUcCUUG-GCC- -5'
29106 5' -57.6 NC_006146.1 + 13978 0.66 0.899391
Target:  5'- aGCCCgucagcGCCGCCA--C-CCAGGccucGGCCGGg -3'
miRNA:   3'- -CGGG------UGGUGGUcaGaGGUCC----UUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 80917 0.66 0.899391
Target:  5'- uGCuCCACCACCuccucuugAGUuccCUCCAGcaccACCGGc -3'
miRNA:   3'- -CG-GGUGGUGG--------UCA---GAGGUCcu--UGGCC- -5'
29106 5' -57.6 NC_006146.1 + 76373 0.66 0.899391
Target:  5'- -aCCGCCACgAGagggCgcgCCGGGGgagggACCGGg -3'
miRNA:   3'- cgGGUGGUGgUCa---Ga--GGUCCU-----UGGCC- -5'
29106 5' -57.6 NC_006146.1 + 8985 0.66 0.899391
Target:  5'- aUCCACCguggaGCCGGUCUCCcacGGGGCg-- -3'
miRNA:   3'- cGGGUGG-----UGGUCAGAGGu--CCUUGgcc -5'
29106 5' -57.6 NC_006146.1 + 8919 0.66 0.899391
Target:  5'- aUCCACCguggaGCCGGUCUCCcacGGGGCg-- -3'
miRNA:   3'- cGGGUGG-----UGGUCAGAGGu--CCUUGgcc -5'
29106 5' -57.6 NC_006146.1 + 154963 0.66 0.899391
Target:  5'- uGCCCAgCCAcCCAGcCUcgcCCAGGcGCCu- -3'
miRNA:   3'- -CGGGU-GGU-GGUCaGA---GGUCCuUGGcc -5'
29106 5' -57.6 NC_006146.1 + 151885 0.66 0.899391
Target:  5'- uGCCCAgCCAcCCAGcCUcgcCCAGGcGCCu- -3'
miRNA:   3'- -CGGGU-GGU-GGUCaGA---GGUCCuUGGcc -5'
29106 5' -57.6 NC_006146.1 + 148807 0.66 0.899391
Target:  5'- uGCCCAgCCAcCCAGcCUcgcCCAGGcGCCu- -3'
miRNA:   3'- -CGGGU-GGU-GGUCaGA---GGUCCuUGGcc -5'
29106 5' -57.6 NC_006146.1 + 145729 0.66 0.899391
Target:  5'- uGCCCAgCCAcCCAGcCUcgcCCAGGcGCCu- -3'
miRNA:   3'- -CGGGU-GGU-GGUCaGA---GGUCCuUGGcc -5'
29106 5' -57.6 NC_006146.1 + 142652 0.66 0.899391
Target:  5'- uGCCCAgCCAcCCAGcCUcgcCCAGGcGCCu- -3'
miRNA:   3'- -CGGGU-GGU-GGUCaGA---GGUCCuUGGcc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.