miRNA display CGI


Results 1 - 20 of 323 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29106 5' -57.6 NC_006146.1 + 130241 1.13 0.001483
Target:  5'- aGCCCACCACCAGUCUCCAGGAACCGGg -3'
miRNA:   3'- -CGGGUGGUGGUCAGAGGUCCUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 56600 0.86 0.09292
Target:  5'- aGCCCGCCGCCGGUCUCCuc--GCCGGc -3'
miRNA:   3'- -CGGGUGGUGGUCAGAGGuccuUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 100741 0.78 0.286582
Target:  5'- cGCCgGCCACCAG-CgccccggCCAGGAGCCaGGc -3'
miRNA:   3'- -CGGgUGGUGGUCaGa------GGUCCUUGG-CC- -5'
29106 5' -57.6 NC_006146.1 + 136984 0.77 0.306621
Target:  5'- aCCCACCggACCGGaggagCUCCAGGAcggggguagGCCGGg -3'
miRNA:   3'- cGGGUGG--UGGUCa----GAGGUCCU---------UGGCC- -5'
29106 5' -57.6 NC_006146.1 + 54895 0.77 0.313535
Target:  5'- gGUCCGCUcgcgccgucugGCCGGcCUUCAGGGACCGGc -3'
miRNA:   3'- -CGGGUGG-----------UGGUCaGAGGUCCUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 136751 0.77 0.313535
Target:  5'- cCCCACCcucGCCGGggCUCCGGGAGgcCCGGc -3'
miRNA:   3'- cGGGUGG---UGGUCa-GAGGUCCUU--GGCC- -5'
29106 5' -57.6 NC_006146.1 + 150428 0.77 0.320567
Target:  5'- aGUCCACCACCAG-CaCCGGGGaguuguagaaGCCGGa -3'
miRNA:   3'- -CGGGUGGUGGUCaGaGGUCCU----------UGGCC- -5'
29106 5' -57.6 NC_006146.1 + 105176 0.76 0.357482
Target:  5'- gGCCgCACCGuCCAGUgaCCGGG-GCCGGg -3'
miRNA:   3'- -CGG-GUGGU-GGUCAgaGGUCCuUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 151931 0.76 0.357482
Target:  5'- gGCCCuGCCGCCc-UCUCUAGGGGCCGc -3'
miRNA:   3'- -CGGG-UGGUGGucAGAGGUCCUUGGCc -5'
29106 5' -57.6 NC_006146.1 + 125040 0.76 0.37306
Target:  5'- cCCCAUCACCGGUC-CCaaaAGGGGCuCGGg -3'
miRNA:   3'- cGGGUGGUGGUCAGaGG---UCCUUG-GCC- -5'
29106 5' -57.6 NC_006146.1 + 68505 0.75 0.405571
Target:  5'- cGCCCcagggacagauACCACCAG-CUCCccgAGGAcCCGGa -3'
miRNA:   3'- -CGGG-----------UGGUGGUCaGAGG---UCCUuGGCC- -5'
29106 5' -57.6 NC_006146.1 + 33306 0.75 0.413129
Target:  5'- uGCgCCGCCGCuCGGUCcuggggcUCCGGGGuCCGGg -3'
miRNA:   3'- -CG-GGUGGUG-GUCAG-------AGGUCCUuGGCC- -5'
29106 5' -57.6 NC_006146.1 + 50856 0.75 0.413974
Target:  5'- aGCagCGCCACCAGUCUCCgcgcGGGGucugugcCCGGa -3'
miRNA:   3'- -CGg-GUGGUGGUCAGAGG----UCCUu------GGCC- -5'
29106 5' -57.6 NC_006146.1 + 137575 0.75 0.429364
Target:  5'- gGUCCGCUGcCCGGUCcuggagcucgggCCGGGGGCCGGg -3'
miRNA:   3'- -CGGGUGGU-GGUCAGa-----------GGUCCUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 135159 0.75 0.436311
Target:  5'- gGUCCGCUGcCCGGUCcuggagcucggggCCGGGGGCCGGg -3'
miRNA:   3'- -CGGGUGGU-GGUCAGa------------GGUCCUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 135345 0.75 0.436311
Target:  5'- gGUCCGCUGcCCGGUCcuggagcucggggCCGGGGGCCGGg -3'
miRNA:   3'- -CGGGUGGU-GGUCAGa------------GGUCCUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 135252 0.75 0.436311
Target:  5'- gGUCCGCUGcCCGGUCcuggagcucggggCCGGGGGCCGGg -3'
miRNA:   3'- -CGGGUGGU-GGUCAGa------------GGUCCUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 135438 0.75 0.436311
Target:  5'- gGUCCGCUGcCCGGUCcuggagcucggggCCGGGGGCCGGg -3'
miRNA:   3'- -CGGGUGGU-GGUCAGa------------GGUCCUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 135531 0.75 0.436311
Target:  5'- gGUCCGCUGcCCGGUCcuggagcucggggCCGGGGGCCGGg -3'
miRNA:   3'- -CGGGUGGU-GGUCAGa------------GGUCCUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 135624 0.75 0.436311
Target:  5'- gGUCCGCUGcCCGGUCcuggagcucggggCCGGGGGCCGGg -3'
miRNA:   3'- -CGGGUGGU-GGUCAGa------------GGUCCUUGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.