Results 21 - 40 of 323 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29106 | 5' | -57.6 | NC_006146.1 | + | 135995 | 0.75 | 0.436311 |
Target: 5'- gGUCCGCUGcCCGGUCcuggagcucggggCCGGGGGCCGGg -3' miRNA: 3'- -CGGGUGGU-GGUCAGa------------GGUCCUUGGCC- -5' |
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29106 | 5' | -57.6 | NC_006146.1 | + | 135809 | 0.75 | 0.436311 |
Target: 5'- gGUCCGCUGcCCGGUCcuggagcucggggCCGGGGGCCGGg -3' miRNA: 3'- -CGGGUGGU-GGUCAGa------------GGUCCUUGGCC- -5' |
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29106 | 5' | -57.6 | NC_006146.1 | + | 136274 | 0.75 | 0.436311 |
Target: 5'- gGUCCGCUGcCCGGUCcuggagcucggggCCGGGGGCCGGg -3' miRNA: 3'- -CGGGUGGU-GGUCAGa------------GGUCCUUGGCC- -5' |
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29106 | 5' | -57.6 | NC_006146.1 | + | 135902 | 0.75 | 0.436311 |
Target: 5'- gGUCCGCUGcCCGGUCcuggagcucggggCCGGGGGCCGGg -3' miRNA: 3'- -CGGGUGGU-GGUCAGa------------GGUCCUUGGCC- -5' |
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29106 | 5' | -57.6 | NC_006146.1 | + | 135159 | 0.75 | 0.436311 |
Target: 5'- gGUCCGCUGcCCGGUCcuggagcucggggCCGGGGGCCGGg -3' miRNA: 3'- -CGGGUGGU-GGUCAGa------------GGUCCUUGGCC- -5' |
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29106 | 5' | -57.6 | NC_006146.1 | + | 136646 | 0.75 | 0.436311 |
Target: 5'- gGUCCGCUGcCCGGUCcuggagcucggggCCGGGGGCCGGg -3' miRNA: 3'- -CGGGUGGU-GGUCAGa------------GGUCCUUGGCC- -5' |
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29106 | 5' | -57.6 | NC_006146.1 | + | 137296 | 0.75 | 0.436311 |
Target: 5'- gGUCCGCUGcCCGGUCcuggagcucggggCCGGGGGCCGGg -3' miRNA: 3'- -CGGGUGGU-GGUCAGa------------GGUCCUUGGCC- -5' |
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29106 | 5' | -57.6 | NC_006146.1 | + | 135345 | 0.75 | 0.436311 |
Target: 5'- gGUCCGCUGcCCGGUCcuggagcucggggCCGGGGGCCGGg -3' miRNA: 3'- -CGGGUGGU-GGUCAGa------------GGUCCUUGGCC- -5' |
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29106 | 5' | -57.6 | NC_006146.1 | + | 136738 | 0.75 | 0.436311 |
Target: 5'- gGUCCGCUGcCCGGUCcuggagcucggggCCGGGGGCCGGg -3' miRNA: 3'- -CGGGUGGU-GGUCAGa------------GGUCCUUGGCC- -5' |
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29106 | 5' | -57.6 | NC_006146.1 | + | 136088 | 0.75 | 0.436311 |
Target: 5'- gGUCCGCUGcCCGGUCcuggagcucggggCCGGGGGCCGGg -3' miRNA: 3'- -CGGGUGGU-GGUCAGa------------GGUCCUUGGCC- -5' |
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29106 | 5' | -57.6 | NC_006146.1 | + | 137110 | 0.75 | 0.436311 |
Target: 5'- gGUCCGCUGcCCGGUCcuggagcucggggCCGGGGGCCGGg -3' miRNA: 3'- -CGGGUGGU-GGUCAGa------------GGUCCUUGGCC- -5' |
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29106 | 5' | -57.6 | NC_006146.1 | + | 137203 | 0.75 | 0.436311 |
Target: 5'- gGUCCGCUGcCCGGUCcuggagcucggggCCGGGGGCCGGg -3' miRNA: 3'- -CGGGUGGU-GGUCAGa------------GGUCCUUGGCC- -5' |
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29106 | 5' | -57.6 | NC_006146.1 | + | 136831 | 0.75 | 0.436311 |
Target: 5'- gGUCCGCUGcCCGGUCcuggagcucggggCCGGGGGCCGGg -3' miRNA: 3'- -CGGGUGGU-GGUCAGa------------GGUCCUUGGCC- -5' |
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29106 | 5' | -57.6 | NC_006146.1 | + | 135438 | 0.75 | 0.436311 |
Target: 5'- gGUCCGCUGcCCGGUCcuggagcucggggCCGGGGGCCGGg -3' miRNA: 3'- -CGGGUGGU-GGUCAGa------------GGUCCUUGGCC- -5' |
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29106 | 5' | -57.6 | NC_006146.1 | + | 136924 | 0.75 | 0.436311 |
Target: 5'- gGUCCGCUGcCCGGUCcuggagcucggggCCGGGGGCCGGg -3' miRNA: 3'- -CGGGUGGU-GGUCAGa------------GGUCCUUGGCC- -5' |
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29106 | 5' | -57.6 | NC_006146.1 | + | 137389 | 0.75 | 0.436311 |
Target: 5'- gGUCCGCUGcCCGGUCcuggagcucggggCCGGGGGCCGGg -3' miRNA: 3'- -CGGGUGGU-GGUCAGa------------GGUCCUUGGCC- -5' |
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29106 | 5' | -57.6 | NC_006146.1 | + | 136367 | 0.75 | 0.436311 |
Target: 5'- gGUCCGCUGcCCGGUCcuggagcucggggCCGGGGGCCGGg -3' miRNA: 3'- -CGGGUGGU-GGUCAGa------------GGUCCUUGGCC- -5' |
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29106 | 5' | -57.6 | NC_006146.1 | + | 137482 | 0.75 | 0.436311 |
Target: 5'- gGUCCGCUGcCCGGUCcuggagcucggggCCGGGGGCCGGg -3' miRNA: 3'- -CGGGUGGU-GGUCAGa------------GGUCCUUGGCC- -5' |
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29106 | 5' | -57.6 | NC_006146.1 | + | 136181 | 0.75 | 0.436311 |
Target: 5'- gGUCCGCUGcCCGGUCcuggagcucggggCCGGGGGCCGGg -3' miRNA: 3'- -CGGGUGGU-GGUCAGa------------GGUCCUUGGCC- -5' |
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29106 | 5' | -57.6 | NC_006146.1 | + | 135717 | 0.74 | 0.453959 |
Target: 5'- gGUCCGCUGCCcGUCcuggagcucggggCCGGGGGCCGGg -3' miRNA: 3'- -CGGGUGGUGGuCAGa------------GGUCCUUGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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