miRNA display CGI


Results 21 - 40 of 323 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29106 5' -57.6 NC_006146.1 + 104167 0.66 0.899391
Target:  5'- uGCCCACCcCCuGaCUCCGaGAACaUGGa -3'
miRNA:   3'- -CGGGUGGuGGuCaGAGGUcCUUG-GCC- -5'
29106 5' -57.6 NC_006146.1 + 8919 0.66 0.899391
Target:  5'- aUCCACCguggaGCCGGUCUCCcacGGGGCg-- -3'
miRNA:   3'- cGGGUGG-----UGGUCAGAGGu--CCUUGgcc -5'
29106 5' -57.6 NC_006146.1 + 8985 0.66 0.899391
Target:  5'- aUCCACCguggaGCCGGUCUCCcacGGGGCg-- -3'
miRNA:   3'- cGGGUGG-----UGGUCAGAGGu--CCUUGgcc -5'
29106 5' -57.6 NC_006146.1 + 76373 0.66 0.899391
Target:  5'- -aCCGCCACgAGagggCgcgCCGGGGgagggACCGGg -3'
miRNA:   3'- cgGGUGGUGgUCa---Ga--GGUCCU-----UGGCC- -5'
29106 5' -57.6 NC_006146.1 + 51953 0.66 0.89751
Target:  5'- uGCgCGCCaACUggcgccgacggggaGGUCUCCGGcaugcGGGCCGGg -3'
miRNA:   3'- -CGgGUGG-UGG--------------UCAGAGGUC-----CUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 74471 0.66 0.895609
Target:  5'- gGCCCACgauggccuugagcggCGCU-GUgUUCAGGAGCUGGc -3'
miRNA:   3'- -CGGGUG---------------GUGGuCAgAGGUCCUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 74746 0.66 0.893044
Target:  5'- aCCCAgUgaGCCAGcCUCCGgGGGGCCa- -3'
miRNA:   3'- cGGGUgG--UGGUCaGAGGU-CCUUGGcc -5'
29106 5' -57.6 NC_006146.1 + 113691 0.66 0.893044
Target:  5'- gGCCCgGCCuCCGG-C-CCGGGGacggcggcggcaGCCGGg -3'
miRNA:   3'- -CGGG-UGGuGGUCaGaGGUCCU------------UGGCC- -5'
29106 5' -57.6 NC_006146.1 + 18373 0.66 0.893044
Target:  5'- uGCUCACC-CUGGUC-CUGGuGGCCGGg -3'
miRNA:   3'- -CGGGUGGuGGUCAGaGGUCcUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 152049 0.66 0.893044
Target:  5'- cGUCCACCACCccggcAGcgC-CCGGGGuCUGGa -3'
miRNA:   3'- -CGGGUGGUGG-----UCa-GaGGUCCUuGGCC- -5'
29106 5' -57.6 NC_006146.1 + 81530 0.66 0.893044
Target:  5'- uGCCCACCACgAGaCcUCGGGccUCGGa -3'
miRNA:   3'- -CGGGUGGUGgUCaGaGGUCCuuGGCC- -5'
29106 5' -57.6 NC_006146.1 + 117937 0.66 0.893044
Target:  5'- uGCgCACUACCGGccuUCUCCGGcGAGuCCa- -3'
miRNA:   3'- -CGgGUGGUGGUC---AGAGGUC-CUU-GGcc -5'
29106 5' -57.6 NC_006146.1 + 157746 0.66 0.892398
Target:  5'- uGCCCGgCACCAcGUCuaugacguugcucUCCucguGGGcCCGGg -3'
miRNA:   3'- -CGGGUgGUGGU-CAG-------------AGGu---CCUuGGCC- -5'
29106 5' -57.6 NC_006146.1 + 69743 0.66 0.889133
Target:  5'- aGCCCagguaaagguuggagACCACCGG-CUUCAGGuaaaaGACCa- -3'
miRNA:   3'- -CGGG---------------UGGUGGUCaGAGGUCC-----UUGGcc -5'
29106 5' -57.6 NC_006146.1 + 136886 0.66 0.887148
Target:  5'- cGCCCGCCugCcccgacccccccccuGcCuUCCAGGugcACCGGa -3'
miRNA:   3'- -CGGGUGGugGu--------------CaG-AGGUCCu--UGGCC- -5'
29106 5' -57.6 NC_006146.1 + 124341 0.66 0.886482
Target:  5'- cGCaCGCCACCcugaucGcCUCCAGGAAUCa- -3'
miRNA:   3'- -CGgGUGGUGGu-----CaGAGGUCCUUGGcc -5'
29106 5' -57.6 NC_006146.1 + 118195 0.66 0.886482
Target:  5'- gGCCgGCCGCCcccugacCUCCcgcccGGAGCUGGa -3'
miRNA:   3'- -CGGgUGGUGGuca----GAGGu----CCUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 66880 0.66 0.886482
Target:  5'- cGCCC-CC-CgGGUCuugagauccagaUCCAGGAccagguugcagACCGGg -3'
miRNA:   3'- -CGGGuGGuGgUCAG------------AGGUCCU-----------UGGCC- -5'
29106 5' -57.6 NC_006146.1 + 39364 0.66 0.886482
Target:  5'- uCCCACCACCAaacGUC-CCAcucGGcgcCCGGu -3'
miRNA:   3'- cGGGUGGUGGU---CAGaGGU---CCuu-GGCC- -5'
29106 5' -57.6 NC_006146.1 + 131105 0.66 0.886482
Target:  5'- cGgCCGCCGucCCAGaagCCGGGAGcuCCGGg -3'
miRNA:   3'- -CgGGUGGU--GGUCagaGGUCCUU--GGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.