Results 41 - 60 of 323 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29106 | 5' | -57.6 | NC_006146.1 | + | 91268 | 0.66 | 0.885814 |
Target: 5'- gGCUCGCCGgccugugacCCuGUCcCCGGGAcgagcucACCGGu -3' miRNA: 3'- -CGGGUGGU---------GGuCAGaGGUCCU-------UGGCC- -5' |
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29106 | 5' | -57.6 | NC_006146.1 | + | 9119 | 0.66 | 0.879708 |
Target: 5'- aUCCACCguggaGCCGGUCUCCcacGGGGCguugccucuuuCGGg -3' miRNA: 3'- cGGGUGG-----UGGUCAGAGGu--CCUUG-----------GCC- -5' |
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29106 | 5' | -57.6 | NC_006146.1 | + | 69239 | 0.66 | 0.879708 |
Target: 5'- aGCCCGuuucCCcCCAGgg-CCAGGu-CCGGg -3' miRNA: 3'- -CGGGU----GGuGGUCagaGGUCCuuGGCC- -5' |
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29106 | 5' | -57.6 | NC_006146.1 | + | 47189 | 0.66 | 0.879708 |
Target: 5'- aGCCCGCCGCCGcccCgagcgCCAGGccccuGGCCGc -3' miRNA: 3'- -CGGGUGGUGGUca-Ga----GGUCC-----UUGGCc -5' |
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29106 | 5' | -57.6 | NC_006146.1 | + | 8511 | 0.66 | 0.879708 |
Target: 5'- gGCCCACCGg-GGUC-CCGGGcGCgGGc -3' miRNA: 3'- -CGGGUGGUggUCAGaGGUCCuUGgCC- -5' |
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29106 | 5' | -57.6 | NC_006146.1 | + | 24237 | 0.66 | 0.879019 |
Target: 5'- cGCCCACCGCCcgggaggguuGUUUucugaccauggacCCAGGccucgugacccuGGCCGGg -3' miRNA: 3'- -CGGGUGGUGGu---------CAGA-------------GGUCC------------UUGGCC- -5' |
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29106 | 5' | -57.6 | NC_006146.1 | + | 123905 | 0.66 | 0.879019 |
Target: 5'- gGgCCGCUGCCGGUCcgacgggcgcaauUCCuGGcggcGGCCGGg -3' miRNA: 3'- -CgGGUGGUGGUCAG-------------AGGuCC----UUGGCC- -5' |
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29106 | 5' | -57.6 | NC_006146.1 | + | 54104 | 0.66 | 0.872726 |
Target: 5'- cGCCCuCCACCAcgcccuugagcGUCUgCAGGu-CCGu -3' miRNA: 3'- -CGGGuGGUGGU-----------CAGAgGUCCuuGGCc -5' |
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29106 | 5' | -57.6 | NC_006146.1 | + | 85373 | 0.66 | 0.872726 |
Target: 5'- uGCCCGguggagaCGCCAGaagCCGGG-ACCGGc -3' miRNA: 3'- -CGGGUg------GUGGUCagaGGUCCuUGGCC- -5' |
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29106 | 5' | -57.6 | NC_006146.1 | + | 45661 | 0.66 | 0.872726 |
Target: 5'- aGUCCGgCGCCAGgccaguggCUCCccuGGAuuGCUGGa -3' miRNA: 3'- -CGGGUgGUGGUCa-------GAGGu--CCU--UGGCC- -5' |
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29106 | 5' | -57.6 | NC_006146.1 | + | 101650 | 0.66 | 0.872726 |
Target: 5'- cGUCCACCuccuCCAGcucCUCCAGGucAUCGu -3' miRNA: 3'- -CGGGUGGu---GGUCa--GAGGUCCu-UGGCc -5' |
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29106 | 5' | -57.6 | NC_006146.1 | + | 47512 | 0.66 | 0.872726 |
Target: 5'- -gCCGCgGCCAGUUccagCCAGGuuGCgGGg -3' miRNA: 3'- cgGGUGgUGGUCAGa---GGUCCu-UGgCC- -5' |
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29106 | 5' | -57.6 | NC_006146.1 | + | 39074 | 0.66 | 0.872726 |
Target: 5'- cGCCgGCCuCCGGUCUggggaaggCCAGG-GCCa- -3' miRNA: 3'- -CGGgUGGuGGUCAGA--------GGUCCuUGGcc -5' |
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29106 | 5' | -57.6 | NC_006146.1 | + | 121726 | 0.66 | 0.872726 |
Target: 5'- aCCCGCCguACCA---UCCGGGAACUGc -3' miRNA: 3'- cGGGUGG--UGGUcagAGGUCCUUGGCc -5' |
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29106 | 5' | -57.6 | NC_006146.1 | + | 99066 | 0.66 | 0.872017 |
Target: 5'- aCCCACCACaguGGUCUCCGgcucuacaucaguGGcAACCa- -3' miRNA: 3'- cGGGUGGUGg--UCAGAGGU-------------CC-UUGGcc -5' |
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29106 | 5' | -57.6 | NC_006146.1 | + | 60882 | 0.66 | 0.870592 |
Target: 5'- cCCCugCAgaccggccuggggcCCAGUggaUCCAGGAGCUGu -3' miRNA: 3'- cGGGugGU--------------GGUCAg--AGGUCCUUGGCc -5' |
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29106 | 5' | -57.6 | NC_006146.1 | + | 102953 | 0.67 | 0.868439 |
Target: 5'- cGCCCuccgagggcaGCCGCCca--UCCGGGAcauacuccacgguggGCCGGg -3' miRNA: 3'- -CGGG----------UGGUGGucagAGGUCCU---------------UGGCC- -5' |
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29106 | 5' | -57.6 | NC_006146.1 | + | 103576 | 0.67 | 0.868439 |
Target: 5'- cGCCCggGCCuggGCCGGgCUcagcgcggacguggcCCGGGAGCUGGc -3' miRNA: 3'- -CGGG--UGG---UGGUCaGA---------------GGUCCUUGGCC- -5' |
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29106 | 5' | -57.6 | NC_006146.1 | + | 136137 | 0.67 | 0.865542 |
Target: 5'- gGUCCGCUGCCccgCUCCggcgGGGGgugGCCGGg -3' miRNA: 3'- -CGGGUGGUGGucaGAGG----UCCU---UGGCC- -5' |
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29106 | 5' | -57.6 | NC_006146.1 | + | 135673 | 0.67 | 0.865542 |
Target: 5'- gGUCCGCUGCCccgCUCCggcgGGGGgugGCCGGg -3' miRNA: 3'- -CGGGUGGUGGucaGAGG----UCCU---UGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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