Results 21 - 40 of 323 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29106 | 5' | -57.6 | NC_006146.1 | + | 9119 | 0.66 | 0.879708 |
Target: 5'- aUCCACCguggaGCCGGUCUCCcacGGGGCguugccucuuuCGGg -3' miRNA: 3'- cGGGUGG-----UGGUCAGAGGu--CCUUG-----------GCC- -5' |
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29106 | 5' | -57.6 | NC_006146.1 | + | 91268 | 0.66 | 0.885814 |
Target: 5'- gGCUCGCCGgccugugacCCuGUCcCCGGGAcgagcucACCGGu -3' miRNA: 3'- -CGGGUGGU---------GGuCAGaGGUCCU-------UGGCC- -5' |
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29106 | 5' | -57.6 | NC_006146.1 | + | 142652 | 0.66 | 0.899391 |
Target: 5'- uGCCCAgCCAcCCAGcCUcgcCCAGGcGCCu- -3' miRNA: 3'- -CGGGU-GGU-GGUCaGA---GGUCCuUGGcc -5' |
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29106 | 5' | -57.6 | NC_006146.1 | + | 145729 | 0.66 | 0.899391 |
Target: 5'- uGCCCAgCCAcCCAGcCUcgcCCAGGcGCCu- -3' miRNA: 3'- -CGGGU-GGU-GGUCaGA---GGUCCuUGGcc -5' |
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29106 | 5' | -57.6 | NC_006146.1 | + | 148807 | 0.66 | 0.899391 |
Target: 5'- uGCCCAgCCAcCCAGcCUcgcCCAGGcGCCu- -3' miRNA: 3'- -CGGGU-GGU-GGUCaGA---GGUCCuUGGcc -5' |
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29106 | 5' | -57.6 | NC_006146.1 | + | 151885 | 0.66 | 0.899391 |
Target: 5'- uGCCCAgCCAcCCAGcCUcgcCCAGGcGCCu- -3' miRNA: 3'- -CGGGU-GGU-GGUCaGA---GGUCCuUGGcc -5' |
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29106 | 5' | -57.6 | NC_006146.1 | + | 154963 | 0.66 | 0.899391 |
Target: 5'- uGCCCAgCCAcCCAGcCUcgcCCAGGcGCCu- -3' miRNA: 3'- -CGGGU-GGU-GGUCaGA---GGUCCuUGGcc -5' |
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29106 | 5' | -57.6 | NC_006146.1 | + | 8919 | 0.66 | 0.899391 |
Target: 5'- aUCCACCguggaGCCGGUCUCCcacGGGGCg-- -3' miRNA: 3'- cGGGUGG-----UGGUCAGAGGu--CCUUGgcc -5' |
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29106 | 5' | -57.6 | NC_006146.1 | + | 8985 | 0.66 | 0.899391 |
Target: 5'- aUCCACCguggaGCCGGUCUCCcacGGGGCg-- -3' miRNA: 3'- cGGGUGG-----UGGUCAGAGGu--CCUUGgcc -5' |
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29106 | 5' | -57.6 | NC_006146.1 | + | 76373 | 0.66 | 0.899391 |
Target: 5'- -aCCGCCACgAGagggCgcgCCGGGGgagggACCGGg -3' miRNA: 3'- cgGGUGGUGgUCa---Ga--GGUCCU-----UGGCC- -5' |
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29106 | 5' | -57.6 | NC_006146.1 | + | 80917 | 0.66 | 0.899391 |
Target: 5'- uGCuCCACCACCuccucuugAGUuccCUCCAGcaccACCGGc -3' miRNA: 3'- -CG-GGUGGUGG--------UCA---GAGGUCcu--UGGCC- -5' |
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29106 | 5' | -57.6 | NC_006146.1 | + | 13978 | 0.66 | 0.899391 |
Target: 5'- aGCCCgucagcGCCGCCA--C-CCAGGccucGGCCGGg -3' miRNA: 3'- -CGGG------UGGUGGUcaGaGGUCC----UUGGCC- -5' |
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29106 | 5' | -57.6 | NC_006146.1 | + | 39364 | 0.66 | 0.886482 |
Target: 5'- uCCCACCACCAaacGUC-CCAcucGGcgcCCGGu -3' miRNA: 3'- cGGGUGGUGGU---CAGaGGU---CCuu-GGCC- -5' |
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29106 | 5' | -57.6 | NC_006146.1 | + | 118195 | 0.66 | 0.886482 |
Target: 5'- gGCCgGCCGCCcccugacCUCCcgcccGGAGCUGGa -3' miRNA: 3'- -CGGgUGGUGGuca----GAGGu----CCUUGGCC- -5' |
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29106 | 5' | -57.6 | NC_006146.1 | + | 124341 | 0.66 | 0.886482 |
Target: 5'- cGCaCGCCACCcugaucGcCUCCAGGAAUCa- -3' miRNA: 3'- -CGgGUGGUGGu-----CaGAGGUCCUUGGcc -5' |
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29106 | 5' | -57.6 | NC_006146.1 | + | 136886 | 0.66 | 0.887148 |
Target: 5'- cGCCCGCCugCcccgacccccccccuGcCuUCCAGGugcACCGGa -3' miRNA: 3'- -CGGGUGGugGu--------------CaG-AGGUCCu--UGGCC- -5' |
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29106 | 5' | -57.6 | NC_006146.1 | + | 69743 | 0.66 | 0.889133 |
Target: 5'- aGCCCagguaaagguuggagACCACCGG-CUUCAGGuaaaaGACCa- -3' miRNA: 3'- -CGGG---------------UGGUGGUCaGAGGUCC-----UUGGcc -5' |
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29106 | 5' | -57.6 | NC_006146.1 | + | 18373 | 0.66 | 0.893044 |
Target: 5'- uGCUCACC-CUGGUC-CUGGuGGCCGGg -3' miRNA: 3'- -CGGGUGGuGGUCAGaGGUCcUUGGCC- -5' |
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29106 | 5' | -57.6 | NC_006146.1 | + | 74471 | 0.66 | 0.895609 |
Target: 5'- gGCCCACgauggccuugagcggCGCU-GUgUUCAGGAGCUGGc -3' miRNA: 3'- -CGGGUG---------------GUGGuCAgAGGUCCUUGGCC- -5' |
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29106 | 5' | -57.6 | NC_006146.1 | + | 104167 | 0.66 | 0.899391 |
Target: 5'- uGCCCACCcCCuGaCUCCGaGAACaUGGa -3' miRNA: 3'- -CGGGUGGuGGuCaGAGGUcCUUG-GCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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