miRNA display CGI


Results 21 - 40 of 323 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29106 5' -57.6 NC_006146.1 + 136553 0.75 0.436311
Target:  5'- gGUCCGCUGcCCGGUCcuggagcucggggCCGGGGGCCGGg -3'
miRNA:   3'- -CGGGUGGU-GGUCAGa------------GGUCCUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 136274 0.75 0.436311
Target:  5'- gGUCCGCUGcCCGGUCcuggagcucggggCCGGGGGCCGGg -3'
miRNA:   3'- -CGGGUGGU-GGUCAGa------------GGUCCUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 135345 0.75 0.436311
Target:  5'- gGUCCGCUGcCCGGUCcuggagcucggggCCGGGGGCCGGg -3'
miRNA:   3'- -CGGGUGGU-GGUCAGa------------GGUCCUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 150428 0.77 0.320567
Target:  5'- aGUCCACCACCAG-CaCCGGGGaguuguagaaGCCGGa -3'
miRNA:   3'- -CGGGUGGUGGUCaGaGGUCCU----------UGGCC- -5'
29106 5' -57.6 NC_006146.1 + 47807 0.74 0.475635
Target:  5'- cGCCCACCGCC-GUCUCau-GGGCuCGGg -3'
miRNA:   3'- -CGGGUGGUGGuCAGAGgucCUUG-GCC- -5'
29106 5' -57.6 NC_006146.1 + 137017 0.75 0.436311
Target:  5'- gGUCCGCUGcCCGGUCcuggagcucggggCCGGGGGCCGGg -3'
miRNA:   3'- -CGGGUGGU-GGUCAGa------------GGUCCUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 136088 0.75 0.436311
Target:  5'- gGUCCGCUGcCCGGUCcuggagcucggggCCGGGGGCCGGg -3'
miRNA:   3'- -CGGGUGGU-GGUCAGa------------GGUCCUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 54895 0.77 0.313535
Target:  5'- gGUCCGCUcgcgccgucugGCCGGcCUUCAGGGACCGGc -3'
miRNA:   3'- -CGGGUGG-----------UGGUCaGAGGUCCUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 136924 0.75 0.436311
Target:  5'- gGUCCGCUGcCCGGUCcuggagcucggggCCGGGGGCCGGg -3'
miRNA:   3'- -CGGGUGGU-GGUCAGa------------GGUCCUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 56600 0.86 0.09292
Target:  5'- aGCCCGCCGCCGGUCUCCuc--GCCGGc -3'
miRNA:   3'- -CGGGUGGUGGUCAGAGGuccuUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 136181 0.75 0.436311
Target:  5'- gGUCCGCUGcCCGGUCcuggagcucggggCCGGGGGCCGGg -3'
miRNA:   3'- -CGGGUGGU-GGUCAGa------------GGUCCUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 136646 0.75 0.436311
Target:  5'- gGUCCGCUGcCCGGUCcuggagcucggggCCGGGGGCCGGg -3'
miRNA:   3'- -CGGGUGGU-GGUCAGa------------GGUCCUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 135809 0.75 0.436311
Target:  5'- gGUCCGCUGcCCGGUCcuggagcucggggCCGGGGGCCGGg -3'
miRNA:   3'- -CGGGUGGU-GGUCAGa------------GGUCCUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 135438 0.75 0.436311
Target:  5'- gGUCCGCUGcCCGGUCcuggagcucggggCCGGGGGCCGGg -3'
miRNA:   3'- -CGGGUGGU-GGUCAGa------------GGUCCUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 137575 0.75 0.429364
Target:  5'- gGUCCGCUGcCCGGUCcuggagcucgggCCGGGGGCCGGg -3'
miRNA:   3'- -CGGGUGGU-GGUCAGa-----------GGUCCUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 151931 0.76 0.357482
Target:  5'- gGCCCuGCCGCCc-UCUCUAGGGGCCGc -3'
miRNA:   3'- -CGGG-UGGUGGucAGAGGUCCUUGGCc -5'
29106 5' -57.6 NC_006146.1 + 82327 0.73 0.541536
Target:  5'- aGCCC-CCACCAG-CUCCAuau-CCGGg -3'
miRNA:   3'- -CGGGuGGUGGUCaGAGGUccuuGGCC- -5'
29106 5' -57.6 NC_006146.1 + 118748 0.74 0.484818
Target:  5'- cGCaggaCACgGCCAagccGUCUCCAGGAAUCGa -3'
miRNA:   3'- -CGg---GUGgUGGU----CAGAGGUCCUUGGCc -5'
29106 5' -57.6 NC_006146.1 + 137389 0.75 0.436311
Target:  5'- gGUCCGCUGcCCGGUCcuggagcucggggCCGGGGGCCGGg -3'
miRNA:   3'- -CGGGUGGU-GGUCAGa------------GGUCCUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 137110 0.75 0.436311
Target:  5'- gGUCCGCUGcCCGGUCcuggagcucggggCCGGGGGCCGGg -3'
miRNA:   3'- -CGGGUGGU-GGUCAGa------------GGUCCUUGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.