miRNA display CGI


Results 1 - 20 of 323 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29106 5' -57.6 NC_006146.1 + 170036 0.7 0.669718
Target:  5'- uCCCGCgGCCAGUCccuggaugUCgGGGAGggcCCGGg -3'
miRNA:   3'- cGGGUGgUGGUCAG--------AGgUCCUU---GGCC- -5'
29106 5' -57.6 NC_006146.1 + 169104 0.7 0.669718
Target:  5'- uCCCGCgGCCAGUCccuggaugUCgGGGAGggcCCGGg -3'
miRNA:   3'- cGGGUGgUGGUCAG--------AGgUCCUU---GGCC- -5'
29106 5' -57.6 NC_006146.1 + 168172 0.7 0.669718
Target:  5'- uCCCGCgGCCAGUCccuggaugUCgGGGAGggcCCGGg -3'
miRNA:   3'- cGGGUGgUGGUCAG--------AGgUCCUU---GGCC- -5'
29106 5' -57.6 NC_006146.1 + 167240 0.7 0.669718
Target:  5'- uCCCGCgGCCAGUCccuggaugUCgGGGAGggcCCGGg -3'
miRNA:   3'- cGGGUGgUGGUCAG--------AGgUCCUU---GGCC- -5'
29106 5' -57.6 NC_006146.1 + 166722 0.67 0.865542
Target:  5'- uCCCGCCgaGCCcGUCUCggggCAGGAgGCCGa -3'
miRNA:   3'- cGGGUGG--UGGuCAGAG----GUCCU-UGGCc -5'
29106 5' -57.6 NC_006146.1 + 162464 0.69 0.747137
Target:  5'- aGCUCGCCcCCgagcucuccuGGUCcCCAGGGuCCGGa -3'
miRNA:   3'- -CGGGUGGuGG----------UCAGaGGUCCUuGGCC- -5'
29106 5' -57.6 NC_006146.1 + 160019 0.71 0.636013
Target:  5'- uGCCCACCGCCccgcuGUCUCCccaugcaaggcuuGaGAGCCGu -3'
miRNA:   3'- -CGGGUGGUGGu----CAGAGGu------------C-CUUGGCc -5'
29106 5' -57.6 NC_006146.1 + 158877 0.73 0.494085
Target:  5'- aCCCGCCacguagcuGCCGGUCU-CGGGcACCGGa -3'
miRNA:   3'- cGGGUGG--------UGGUCAGAgGUCCuUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 158078 0.71 0.65388
Target:  5'- gGUCCgGCCGCCGgagggcucuaacccuGUCUCUguccacuagaGGGGACCGGg -3'
miRNA:   3'- -CGGG-UGGUGGU---------------CAGAGG----------UCCUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 157746 0.66 0.892398
Target:  5'- uGCCCGgCACCAcGUCuaugacguugcucUCCucguGGGcCCGGg -3'
miRNA:   3'- -CGGGUgGUGGU-CAG-------------AGGu---CCUuGGCC- -5'
29106 5' -57.6 NC_006146.1 + 156702 0.71 0.610201
Target:  5'- cGCgCCACCGCCuccccgUCCAGGcuCCGGg -3'
miRNA:   3'- -CG-GGUGGUGGucag--AGGUCCuuGGCC- -5'
29106 5' -57.6 NC_006146.1 + 156579 0.67 0.861135
Target:  5'- gGCCCugcgugaguucuccaGCaggugCGCCAG-CUCCAGGGACaGGg -3'
miRNA:   3'- -CGGG---------------UG-----GUGGUCaGAGGUCCUUGgCC- -5'
29106 5' -57.6 NC_006146.1 + 156347 0.7 0.69919
Target:  5'- cGCCCcgaaagcggcCCAgCAG-CUCCAGGGcCCGGu -3'
miRNA:   3'- -CGGGu---------GGUgGUCaGAGGUCCUuGGCC- -5'
29106 5' -57.6 NC_006146.1 + 155995 0.7 0.708919
Target:  5'- aGCuCCGCCACC----UCCGGGGGCaCGGu -3'
miRNA:   3'- -CG-GGUGGUGGucagAGGUCCUUG-GCC- -5'
29106 5' -57.6 NC_006146.1 + 155841 0.71 0.620123
Target:  5'- aGCCC-CCGCCAGUgccucCUCgCAGGc-CCGGc -3'
miRNA:   3'- -CGGGuGGUGGUCA-----GAG-GUCCuuGGCC- -5'
29106 5' -57.6 NC_006146.1 + 155328 0.68 0.774833
Target:  5'- cGCCgACgCGCCuGUCcucCCAGGGACCc- -3'
miRNA:   3'- -CGGgUG-GUGGuCAGa--GGUCCUUGGcc -5'
29106 5' -57.6 NC_006146.1 + 154999 0.71 0.65388
Target:  5'- gGUCCgGCCGCCGgagggcucuaacccuGUCUCUguccacuagaGGGGACCGGg -3'
miRNA:   3'- -CGGG-UGGUGGU---------------CAGAGG----------UCCUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 154963 0.66 0.899391
Target:  5'- uGCCCAgCCAcCCAGcCUcgcCCAGGcGCCu- -3'
miRNA:   3'- -CGGGU-GGU-GGUCaGA---GGUCCuUGGcc -5'
29106 5' -57.6 NC_006146.1 + 152049 0.66 0.893044
Target:  5'- cGUCCACCACCccggcAGcgC-CCGGGGuCUGGa -3'
miRNA:   3'- -CGGGUGGUGG-----UCa-GaGGUCCUuGGCC- -5'
29106 5' -57.6 NC_006146.1 + 151931 0.76 0.357482
Target:  5'- gGCCCuGCCGCCc-UCUCUAGGGGCCGc -3'
miRNA:   3'- -CGGG-UGGUGGucAGAGGUCCUUGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.