miRNA display CGI


Results 41 - 60 of 323 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29106 5' -57.6 NC_006146.1 + 135717 0.74 0.453959
Target:  5'- gGUCCGCUGCCcGUCcuggagcucggggCCGGGGGCCGGg -3'
miRNA:   3'- -CGGGUGGUGGuCAGa------------GGUCCUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 136088 0.75 0.436311
Target:  5'- gGUCCGCUGcCCGGUCcuggagcucggggCCGGGGGCCGGg -3'
miRNA:   3'- -CGGGUGGU-GGUCAGa------------GGUCCUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 54895 0.77 0.313535
Target:  5'- gGUCCGCUcgcgccgucugGCCGGcCUUCAGGGACCGGc -3'
miRNA:   3'- -CGGGUGG-----------UGGUCaGAGGUCCUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 137482 0.75 0.436311
Target:  5'- gGUCCGCUGcCCGGUCcuggagcucggggCCGGGGGCCGGg -3'
miRNA:   3'- -CGGGUGGU-GGUCAGa------------GGUCCUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 56600 0.86 0.09292
Target:  5'- aGCCCGCCGCCGGUCUCCuc--GCCGGc -3'
miRNA:   3'- -CGGGUGGUGGUCAGAGGuccuUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 167240 0.7 0.669718
Target:  5'- uCCCGCgGCCAGUCccuggaugUCgGGGAGggcCCGGg -3'
miRNA:   3'- cGGGUGgUGGUCAG--------AGgUCCUU---GGCC- -5'
29106 5' -57.6 NC_006146.1 + 151931 0.76 0.357482
Target:  5'- gGCCCuGCCGCCc-UCUCUAGGGGCCGc -3'
miRNA:   3'- -CGGG-UGGUGGucAGAGGUCCUUGGCc -5'
29106 5' -57.6 NC_006146.1 + 48342 0.71 0.649912
Target:  5'- gGCCagGCguCCAGUCUggCCAGcGGGCCGGc -3'
miRNA:   3'- -CGGg-UGguGGUCAGA--GGUC-CUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 28946 0.71 0.630054
Target:  5'- cGCCCGCCcgGCCAGagacUCUCCcucgcggacAGGGGCCu- -3'
miRNA:   3'- -CGGGUGG--UGGUC----AGAGG---------UCCUUGGcc -5'
29106 5' -57.6 NC_006146.1 + 13557 0.71 0.630054
Target:  5'- cGCCCGCCcgGCCAGagacUCUCCcucgcggacAGGGGCCu- -3'
miRNA:   3'- -CGGGUGG--UGGUC----AGAGG---------UCCUUGGcc -5'
29106 5' -57.6 NC_006146.1 + 156702 0.71 0.610201
Target:  5'- cGCgCCACCGCCuccccgUCCAGGcuCCGGg -3'
miRNA:   3'- -CG-GGUGGUGGucag--AGGUCCuuGGCC- -5'
29106 5' -57.6 NC_006146.1 + 82327 0.73 0.541536
Target:  5'- aGCCC-CCACCAG-CUCCAuau-CCGGg -3'
miRNA:   3'- -CGGGuGGUGGUCaGAGGUccuuGGCC- -5'
29106 5' -57.6 NC_006146.1 + 118748 0.74 0.484818
Target:  5'- cGCaggaCACgGCCAagccGUCUCCAGGAAUCGa -3'
miRNA:   3'- -CGg---GUGgUGGU----CAGAGGUCCUUGGCc -5'
29106 5' -57.6 NC_006146.1 + 137203 0.75 0.436311
Target:  5'- gGUCCGCUGcCCGGUCcuggagcucggggCCGGGGGCCGGg -3'
miRNA:   3'- -CGGGUGGU-GGUCAGa------------GGUCCUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 136924 0.75 0.436311
Target:  5'- gGUCCGCUGcCCGGUCcuggagcucggggCCGGGGGCCGGg -3'
miRNA:   3'- -CGGGUGGU-GGUCAGa------------GGUCCUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 136553 0.75 0.436311
Target:  5'- gGUCCGCUGcCCGGUCcuggagcucggggCCGGGGGCCGGg -3'
miRNA:   3'- -CGGGUGGU-GGUCAGa------------GGUCCUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 136274 0.75 0.436311
Target:  5'- gGUCCGCUGcCCGGUCcuggagcucggggCCGGGGGCCGGg -3'
miRNA:   3'- -CGGGUGGU-GGUCAGa------------GGUCCUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 135809 0.75 0.436311
Target:  5'- gGUCCGCUGcCCGGUCcuggagcucggggCCGGGGGCCGGg -3'
miRNA:   3'- -CGGGUGGU-GGUCAGa------------GGUCCUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 135438 0.75 0.436311
Target:  5'- gGUCCGCUGcCCGGUCcuggagcucggggCCGGGGGCCGGg -3'
miRNA:   3'- -CGGGUGGU-GGUCAGa------------GGUCCUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 137575 0.75 0.429364
Target:  5'- gGUCCGCUGcCCGGUCcuggagcucgggCCGGGGGCCGGg -3'
miRNA:   3'- -CGGGUGGU-GGUCAGa-----------GGUCCUUGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.