Results 41 - 60 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29108 | 3' | -63.1 | NC_006146.1 | + | 132408 | 0.68 | 0.502756 |
Target: 5'- gGGGaUGGUGGgccAGACacgGUGGGUGUGGa- -3' miRNA: 3'- -CCC-GCCACC---UCUGg--CGCCCACGCCac -5' |
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29108 | 3' | -63.1 | NC_006146.1 | + | 41054 | 0.68 | 0.502756 |
Target: 5'- cGGCGGcccUGGGGGCCuCGGG-GUGGa- -3' miRNA: 3'- cCCGCC---ACCUCUGGcGCCCaCGCCac -5' |
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29108 | 3' | -63.1 | NC_006146.1 | + | 41364 | 0.69 | 0.497329 |
Target: 5'- uGGCGGUGGuGGCCGUGGcucUGUcucugcuguuucugaGGUGg -3' miRNA: 3'- cCCGCCACCuCUGGCGCCc--ACG---------------CCAC- -5' |
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29108 | 3' | -63.1 | NC_006146.1 | + | 78063 | 0.69 | 0.493726 |
Target: 5'- gGGGUGGUuGuAGugCucgaaGUGGGUGUGGUGg -3' miRNA: 3'- -CCCGCCAcC-UCugG-----CGCCCACGCCAC- -5' |
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29108 | 3' | -63.1 | NC_006146.1 | + | 55257 | 0.69 | 0.493726 |
Target: 5'- cGGGCGGcccGGGcgaagcGGCuCGUGGGgcucGCGGUGg -3' miRNA: 3'- -CCCGCCa--CCU------CUG-GCGCCCa---CGCCAC- -5' |
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29108 | 3' | -63.1 | NC_006146.1 | + | 10866 | 0.69 | 0.470608 |
Target: 5'- cGGCucucaagccuugcauGG-GGAGACaGCGGG-GCGGUGg -3' miRNA: 3'- cCCG---------------CCaCCUCUGgCGCCCaCGCCAC- -5' |
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29108 | 3' | -63.1 | NC_006146.1 | + | 100008 | 0.69 | 0.4671 |
Target: 5'- gGGaGCGGgcacgucgGGAGGCgGCGGGguccGCGGc- -3' miRNA: 3'- -CC-CGCCa-------CCUCUGgCGCCCa---CGCCac -5' |
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29108 | 3' | -63.1 | NC_006146.1 | + | 71945 | 0.69 | 0.4671 |
Target: 5'- gGGGUGGUGGAcACUgagGUGGG-GCuGGUGa -3' miRNA: 3'- -CCCGCCACCUcUGG---CGCCCaCG-CCAC- -5' |
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29108 | 3' | -63.1 | NC_006146.1 | + | 140081 | 0.69 | 0.461864 |
Target: 5'- gGGGUGGUGGAGGggguggaagagggggUgGCGGaG-GUGGUGg -3' miRNA: 3'- -CCCGCCACCUCU---------------GgCGCC-CaCGCCAC- -5' |
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29108 | 3' | -63.1 | NC_006146.1 | + | 159819 | 0.69 | 0.45839 |
Target: 5'- -cGUGGUGGGuAUCGCGGGUGgGGc- -3' miRNA: 3'- ccCGCCACCUcUGGCGCCCACgCCac -5' |
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29108 | 3' | -63.1 | NC_006146.1 | + | 71909 | 0.69 | 0.449768 |
Target: 5'- gGGGUGGUGGAcACUgagGUGGG-GCuGGUGg -3' miRNA: 3'- -CCCGCCACCUcUGG---CGCCCaCG-CCAC- -5' |
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29108 | 3' | -63.1 | NC_006146.1 | + | 71873 | 0.69 | 0.449768 |
Target: 5'- gGGGUGGUGGAcACUgagGUGGG-GCuGGUGg -3' miRNA: 3'- -CCCGCCACCUcUGG---CGCCCaCG-CCAC- -5' |
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29108 | 3' | -63.1 | NC_006146.1 | + | 55015 | 0.7 | 0.441235 |
Target: 5'- cGGGCGGgaUGGGGGCgGgCGGGaUGgGGg- -3' miRNA: 3'- -CCCGCC--ACCUCUGgC-GCCC-ACgCCac -5' |
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29108 | 3' | -63.1 | NC_006146.1 | + | 122499 | 0.7 | 0.42445 |
Target: 5'- cGGCGGggucgagagaaUGGAGGCCGCGGaGcccggGUGGUu -3' miRNA: 3'- cCCGCC-----------ACCUCUGGCGCC-Ca----CGCCAc -5' |
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29108 | 3' | -63.1 | NC_006146.1 | + | 51889 | 0.7 | 0.416201 |
Target: 5'- gGGGagGGUGGAGGCUGCGucgGCGGg- -3' miRNA: 3'- -CCCg-CCACCUCUGGCGCccaCGCCac -5' |
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29108 | 3' | -63.1 | NC_006146.1 | + | 33606 | 0.71 | 0.384213 |
Target: 5'- uGGGC-GUGGu--CCGCGGGUuCGGUGc -3' miRNA: 3'- -CCCGcCACCucuGGCGCCCAcGCCAC- -5' |
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29108 | 3' | -63.1 | NC_006146.1 | + | 61825 | 0.71 | 0.384213 |
Target: 5'- gGGGCgcuGGUGGGGGCaGUGGG-GCuGGUGc -3' miRNA: 3'- -CCCG---CCACCUCUGgCGCCCaCG-CCAC- -5' |
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29108 | 3' | -63.1 | NC_006146.1 | + | 108603 | 0.71 | 0.383434 |
Target: 5'- uGGGCucucccaGGUaGGGGuCCGCGGaG-GCGGUGg -3' miRNA: 3'- -CCCG-------CCA-CCUCuGGCGCC-CaCGCCAC- -5' |
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29108 | 3' | -63.1 | NC_006146.1 | + | 53448 | 0.71 | 0.376474 |
Target: 5'- aGGGCGGUggugucugcccgGGAGG-CGCGGGUGCcucgucGGUc -3' miRNA: 3'- -CCCGCCA------------CCUCUgGCGCCCACG------CCAc -5' |
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29108 | 3' | -63.1 | NC_006146.1 | + | 44534 | 0.71 | 0.368841 |
Target: 5'- cGGGCGGa--GGACgGUGGGgggcUGCGGUGg -3' miRNA: 3'- -CCCGCCaccUCUGgCGCCC----ACGCCAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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