miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29108 3' -63.1 NC_006146.1 + 92027 0.67 0.615416
Target:  5'- gGGGCGGgcccggccUGGGGcuGCUGCuGGGggGCGGg- -3'
miRNA:   3'- -CCCGCC--------ACCUC--UGGCG-CCCa-CGCCac -5'
29108 3' -63.1 NC_006146.1 + 48005 0.67 0.605832
Target:  5'- uGGUGGcgGGAGGCUugGCGGGggaggcacgGCGGg- -3'
miRNA:   3'- cCCGCCa-CCUCUGG--CGCCCa--------CGCCac -5'
29108 3' -63.1 NC_006146.1 + 90639 0.67 0.605832
Target:  5'- aGGGUGGUuugGGAGgcGCCGCGGcGaG-GGUGg -3'
miRNA:   3'- -CCCGCCA---CCUC--UGGCGCC-CaCgCCAC- -5'
29108 3' -63.1 NC_006146.1 + 92087 0.67 0.604874
Target:  5'- gGGGCGGcccggccUGGGGcuGCUGCuGGGggGCGGg- -3'
miRNA:   3'- -CCCGCC-------ACCUC--UGGCG-CCCa-CGCCac -5'
29108 3' -63.1 NC_006146.1 + 33780 0.67 0.596265
Target:  5'- cGGGUGGgcgugguccgaUGG-GuCCGCGGGUuuGGUGc -3'
miRNA:   3'- -CCCGCC-----------ACCuCuGGCGCCCAcgCCAC- -5'
29108 3' -63.1 NC_006146.1 + 51454 0.67 0.558288
Target:  5'- uGGGCGGgacuagaggugUGGAGAUgGgCGGGggcUGCGGc- -3'
miRNA:   3'- -CCCGCC-----------ACCUCUGgC-GCCC---ACGCCac -5'
29108 3' -63.1 NC_006146.1 + 77832 0.67 0.558288
Target:  5'- cGGCGGaGGGGGggGCGGG-GgGGUGg -3'
miRNA:   3'- cCCGCCaCCUCUggCGCCCaCgCCAC- -5'
29108 3' -63.1 NC_006146.1 + 57341 0.68 0.548893
Target:  5'- gGGGCGG-GGc--CC-CGGGUGuCGGUGa -3'
miRNA:   3'- -CCCGCCaCCucuGGcGCCCAC-GCCAC- -5'
29108 3' -63.1 NC_006146.1 + 43591 0.68 0.548893
Target:  5'- gGGaGCGGggcgGGAGGCCGgguCGGGU-CGGg- -3'
miRNA:   3'- -CC-CGCCa---CCUCUGGC---GCCCAcGCCac -5'
29108 3' -63.1 NC_006146.1 + 168331 0.68 0.543279
Target:  5'- aGGGCGGggccggggccuggcGGGGGCCagcGCGGGgucccgggGCGGg- -3'
miRNA:   3'- -CCCGCCa-------------CCUCUGG---CGCCCa-------CGCCac -5'
29108 3' -63.1 NC_006146.1 + 167399 0.68 0.543279
Target:  5'- aGGGCGGggccggggccuggcGGGGGCCagcGCGGGgucccgggGCGGg- -3'
miRNA:   3'- -CCCGCCa-------------CCUCUGG---CGCCCa-------CGCCac -5'
29108 3' -63.1 NC_006146.1 + 170194 0.68 0.543279
Target:  5'- aGGGCGGggccggggccuggcGGGGGCCagcGCGGGgucccgggGCGGg- -3'
miRNA:   3'- -CCCGCCa-------------CCUCUGG---CGCCCa-------CGCCac -5'
29108 3' -63.1 NC_006146.1 + 169263 0.68 0.543279
Target:  5'- aGGGCGGggccggggccuggcGGGGGCCagcGCGGGgucccgggGCGGg- -3'
miRNA:   3'- -CCCGCCa-------------CCUCUGG---CGCCCa-------CGCCac -5'
29108 3' -63.1 NC_006146.1 + 137379 0.68 0.539547
Target:  5'- cGGGCacaaccuaGGgagGGAGGCCGggaGGGUGCuGGg- -3'
miRNA:   3'- -CCCG--------CCa--CCUCUGGCg--CCCACG-CCac -5'
29108 3' -63.1 NC_006146.1 + 40433 0.68 0.539547
Target:  5'- gGGGCGGcaGcGGCCccguagGCGGGUGCGGc- -3'
miRNA:   3'- -CCCGCCacCuCUGG------CGCCCACGCCac -5'
29108 3' -63.1 NC_006146.1 + 5646 0.68 0.539547
Target:  5'- uGGCGGgggacagGGGGacgagcaccaGCCGCGGGUGCu--- -3'
miRNA:   3'- cCCGCCa------CCUC----------UGGCGCCCACGccac -5'
29108 3' -63.1 NC_006146.1 + 127582 0.68 0.529331
Target:  5'- uGGGCGGccGAGGCCGCgccggccGGGUGaGaGUGa -3'
miRNA:   3'- -CCCGCCacCUCUGGCG-------CCCACgC-CAC- -5'
29108 3' -63.1 NC_006146.1 + 76246 0.68 0.509119
Target:  5'- uGGCGGaGGAuGGCCagaaugugucagguGCGGGUaGUGGUGu -3'
miRNA:   3'- cCCGCCaCCU-CUGG--------------CGCCCA-CGCCAC- -5'
29108 3' -63.1 NC_006146.1 + 33646 0.68 0.502756
Target:  5'- gGGGUGGgGGAGGgaG-GGGUGUGGUc -3'
miRNA:   3'- -CCCGCCaCCUCUggCgCCCACGCCAc -5'
29108 3' -63.1 NC_006146.1 + 33833 0.68 0.502756
Target:  5'- gGGGUGGgGGAGGgaG-GGGUGUGGUc -3'
miRNA:   3'- -CCCGCCaCCUCUggCgCCCACGCCAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.