miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29108 3' -63.1 NC_006146.1 + 33833 0.68 0.502756
Target:  5'- gGGGUGGgGGAGGgaG-GGGUGUGGUc -3'
miRNA:   3'- -CCCGCCaCCUCUggCgCCCACGCCAc -5'
29108 3' -63.1 NC_006146.1 + 33646 0.68 0.502756
Target:  5'- gGGGUGGgGGAGGgaG-GGGUGUGGUc -3'
miRNA:   3'- -CCCGCCaCCUCUggCgCCCACGCCAc -5'
29108 3' -63.1 NC_006146.1 + 71909 0.69 0.449768
Target:  5'- gGGGUGGUGGAcACUgagGUGGG-GCuGGUGg -3'
miRNA:   3'- -CCCGCCACCUcUGG---CGCCCaCG-CCAC- -5'
29108 3' -63.1 NC_006146.1 + 51889 0.7 0.416201
Target:  5'- gGGGagGGUGGAGGCUGCGucgGCGGg- -3'
miRNA:   3'- -CCCg-CCACCUCUGGCGCccaCGCCac -5'
29108 3' -63.1 NC_006146.1 + 131553 0.66 0.62501
Target:  5'- uGGUGGUGG-GACgC-CGGGUGguuUGGUGa -3'
miRNA:   3'- cCCGCCACCuCUG-GcGCCCAC---GCCAC- -5'
29108 3' -63.1 NC_006146.1 + 169263 0.68 0.543279
Target:  5'- aGGGCGGggccggggccuggcGGGGGCCagcGCGGGgucccgggGCGGg- -3'
miRNA:   3'- -CCCGCCa-------------CCUCUGG---CGCCCa-------CGCCac -5'
29108 3' -63.1 NC_006146.1 + 55257 0.69 0.493726
Target:  5'- cGGGCGGcccGGGcgaagcGGCuCGUGGGgcucGCGGUGg -3'
miRNA:   3'- -CCCGCCa--CCU------CUG-GCGCCCa---CGCCAC- -5'
29108 3' -63.1 NC_006146.1 + 33606 0.71 0.384213
Target:  5'- uGGGC-GUGGu--CCGCGGGUuCGGUGc -3'
miRNA:   3'- -CCCGcCACCucuGGCGCCCAcGCCAC- -5'
29108 3' -63.1 NC_006146.1 + 168331 0.68 0.543279
Target:  5'- aGGGCGGggccggggccuggcGGGGGCCagcGCGGGgucccgggGCGGg- -3'
miRNA:   3'- -CCCGCCa-------------CCUCUGG---CGCCCa-------CGCCac -5'
29108 3' -63.1 NC_006146.1 + 53448 0.71 0.376474
Target:  5'- aGGGCGGUggugucugcccgGGAGG-CGCGGGUGCcucgucGGUc -3'
miRNA:   3'- -CCCGCCA------------CCUCUgGCGCCCACG------CCAc -5'
29108 3' -63.1 NC_006146.1 + 41364 0.69 0.497329
Target:  5'- uGGCGGUGGuGGCCGUGGcucUGUcucugcuguuucugaGGUGg -3'
miRNA:   3'- cCCGCCACCuCUGGCGCCc--ACG---------------CCAC- -5'
29108 3' -63.1 NC_006146.1 + 132408 0.68 0.502756
Target:  5'- gGGGaUGGUGGgccAGACacgGUGGGUGUGGa- -3'
miRNA:   3'- -CCC-GCCACC---UCUGg--CGCCCACGCCac -5'
29108 3' -63.1 NC_006146.1 + 10866 0.69 0.470608
Target:  5'- cGGCucucaagccuugcauGG-GGAGACaGCGGG-GCGGUGg -3'
miRNA:   3'- cCCG---------------CCaCCUCUGgCGCCCaCGCCAC- -5'
29108 3' -63.1 NC_006146.1 + 71945 0.69 0.4671
Target:  5'- gGGGUGGUGGAcACUgagGUGGG-GCuGGUGa -3'
miRNA:   3'- -CCCGCCACCUcUGG---CGCCCaCG-CCAC- -5'
29108 3' -63.1 NC_006146.1 + 71873 0.69 0.449768
Target:  5'- gGGGUGGUGGAcACUgagGUGGG-GCuGGUGg -3'
miRNA:   3'- -CCCGCCACCUcUGG---CGCCCaCG-CCAC- -5'
29108 3' -63.1 NC_006146.1 + 55015 0.7 0.441235
Target:  5'- cGGGCGGgaUGGGGGCgGgCGGGaUGgGGg- -3'
miRNA:   3'- -CCCGCC--ACCUCUGgC-GCCC-ACgCCac -5'
29108 3' -63.1 NC_006146.1 + 34018 0.66 0.672924
Target:  5'- gGGGgGGUcGGGGCagGCGGGcGUGGUc -3'
miRNA:   3'- -CCCgCCAcCUCUGg-CGCCCaCGCCAc -5'
29108 3' -63.1 NC_006146.1 + 51412 0.66 0.62501
Target:  5'- gGGGCugaGGaguUGGAGugCGCGGGacuagaggUGUGGa- -3'
miRNA:   3'- -CCCG---CC---ACCUCugGCGCCC--------ACGCCac -5'
29108 3' -63.1 NC_006146.1 + 33780 0.67 0.596265
Target:  5'- cGGGUGGgcgugguccgaUGG-GuCCGCGGGUuuGGUGc -3'
miRNA:   3'- -CCCGCC-----------ACCuCuGGCGCCCAcgCCAC- -5'
29108 3' -63.1 NC_006146.1 + 170194 0.68 0.543279
Target:  5'- aGGGCGGggccggggccuggcGGGGGCCagcGCGGGgucccgggGCGGg- -3'
miRNA:   3'- -CCCGCCa-------------CCUCUGG---CGCCCa-------CGCCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.