Results 1 - 20 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29108 | 3' | -63.1 | NC_006146.1 | + | 132983 | 1.09 | 0.000832 |
Target: 5'- gGGGCGGUGGAGACCGCGGGUGCGGUGa -3' miRNA: 3'- -CCCGCCACCUCUGGCGCCCACGCCAC- -5' |
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29108 | 3' | -63.1 | NC_006146.1 | + | 71873 | 0.69 | 0.449768 |
Target: 5'- gGGGUGGUGGAcACUgagGUGGG-GCuGGUGg -3' miRNA: 3'- -CCCGCCACCUcUGG---CGCCCaCG-CCAC- -5' |
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29108 | 3' | -63.1 | NC_006146.1 | + | 71945 | 0.69 | 0.4671 |
Target: 5'- gGGGUGGUGGAcACUgagGUGGG-GCuGGUGa -3' miRNA: 3'- -CCCGCCACCUcUGG---CGCCCaCG-CCAC- -5' |
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29108 | 3' | -63.1 | NC_006146.1 | + | 34018 | 0.66 | 0.672924 |
Target: 5'- gGGGgGGUcGGGGCagGCGGGcGUGGUc -3' miRNA: 3'- -CCCgCCAcCUCUGg-CGCCCaCGCCAc -5' |
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29108 | 3' | -63.1 | NC_006146.1 | + | 169485 | 0.74 | 0.2557 |
Target: 5'- gGGGCGGaggGGGGGgucCCGCGGGgcccgGCGcGUGc -3' miRNA: 3'- -CCCGCCa--CCUCU---GGCGCCCa----CGC-CAC- -5' |
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29108 | 3' | -63.1 | NC_006146.1 | + | 170416 | 0.74 | 0.2557 |
Target: 5'- gGGGCGGaggGGGGGgucCCGCGGGgcccgGCGcGUGc -3' miRNA: 3'- -CCCGCCa--CCUCU---GGCGCCCa----CGC-CAC- -5' |
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29108 | 3' | -63.1 | NC_006146.1 | + | 167890 | 0.73 | 0.279495 |
Target: 5'- gGGGCGGcccGGGGACCcucGCGGGggcaccgGCGcGUGg -3' miRNA: 3'- -CCCGCCa--CCUCUGG---CGCCCa------CGC-CAC- -5' |
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29108 | 3' | -63.1 | NC_006146.1 | + | 168822 | 0.73 | 0.279495 |
Target: 5'- gGGGCGGcccGGGGACCcucGCGGGggcaccgGCGcGUGg -3' miRNA: 3'- -CCCGCCa--CCUCUGG---CGCCCa------CGC-CAC- -5' |
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29108 | 3' | -63.1 | NC_006146.1 | + | 44216 | 0.72 | 0.325309 |
Target: 5'- gGGGCGGUgccuuGGuGACCGUcuccucuggccGGGcgGCGGUGu -3' miRNA: 3'- -CCCGCCA-----CCuCUGGCG-----------CCCa-CGCCAC- -5' |
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29108 | 3' | -63.1 | NC_006146.1 | + | 55015 | 0.7 | 0.441235 |
Target: 5'- cGGGCGGgaUGGGGGCgGgCGGGaUGgGGg- -3' miRNA: 3'- -CCCGCC--ACCUCUGgC-GCCC-ACgCCac -5' |
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29108 | 3' | -63.1 | NC_006146.1 | + | 53448 | 0.71 | 0.376474 |
Target: 5'- aGGGCGGUggugucugcccgGGAGG-CGCGGGUGCcucgucGGUc -3' miRNA: 3'- -CCCGCCA------------CCUCUgGCGCCCACG------CCAc -5' |
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29108 | 3' | -63.1 | NC_006146.1 | + | 44951 | 0.72 | 0.325309 |
Target: 5'- gGGGCGcGgGGAGGCCcCGGGggacucgaccGCGGUGg -3' miRNA: 3'- -CCCGC-CaCCUCUGGcGCCCa---------CGCCAC- -5' |
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29108 | 3' | -63.1 | NC_006146.1 | + | 68742 | 0.74 | 0.23306 |
Target: 5'- gGGGUGGUGGAGGCC-CaGGUggccaagcuucagGCGGUGc -3' miRNA: 3'- -CCCGCCACCUCUGGcGcCCA-------------CGCCAC- -5' |
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29108 | 3' | -63.1 | NC_006146.1 | + | 33606 | 0.71 | 0.384213 |
Target: 5'- uGGGC-GUGGu--CCGCGGGUuCGGUGc -3' miRNA: 3'- -CCCGcCACCucuGGCGCCCAcGCCAC- -5' |
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29108 | 3' | -63.1 | NC_006146.1 | + | 167621 | 0.74 | 0.2557 |
Target: 5'- gGGGCGGaggGGGGGgucCCGCGGGgcccgGCGcGUGc -3' miRNA: 3'- -CCCGCCa--CCUCU---GGCGCCCa----CGC-CAC- -5' |
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29108 | 3' | -63.1 | NC_006146.1 | + | 169754 | 0.73 | 0.279495 |
Target: 5'- gGGGCGGcccGGGGACCcucGCGGGggcaccgGCGcGUGg -3' miRNA: 3'- -CCCGCCa--CCUCUGG---CGCCCa------CGC-CAC- -5' |
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29108 | 3' | -63.1 | NC_006146.1 | + | 51889 | 0.7 | 0.416201 |
Target: 5'- gGGGagGGUGGAGGCUGCGucgGCGGg- -3' miRNA: 3'- -CCCg-CCACCUCUGGCGCccaCGCCac -5' |
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29108 | 3' | -63.1 | NC_006146.1 | + | 71909 | 0.69 | 0.449768 |
Target: 5'- gGGGUGGUGGAcACUgagGUGGG-GCuGGUGg -3' miRNA: 3'- -CCCGCCACCUcUGG---CGCCCaCG-CCAC- -5' |
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29108 | 3' | -63.1 | NC_006146.1 | + | 168553 | 0.74 | 0.2557 |
Target: 5'- gGGGCGGaggGGGGGgucCCGCGGGgcccgGCGcGUGc -3' miRNA: 3'- -CCCGCCa--CCUCU---GGCGCCCa----CGC-CAC- -5' |
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29108 | 3' | -63.1 | NC_006146.1 | + | 55811 | 0.74 | 0.261489 |
Target: 5'- gGGGCGGUGGAagaGGCCGUcccggccuGGGUggGCGGa- -3' miRNA: 3'- -CCCGCCACCU---CUGGCG--------CCCA--CGCCac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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