miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29108 3' -63.1 NC_006146.1 + 159819 0.69 0.45839
Target:  5'- -cGUGGUGGGuAUCGCGGGUGgGGc- -3'
miRNA:   3'- ccCGCCACCUcUGGCGCCCACgCCac -5'
29108 3' -63.1 NC_006146.1 + 137379 0.68 0.539547
Target:  5'- cGGGCacaaccuaGGgagGGAGGCCGggaGGGUGCuGGg- -3'
miRNA:   3'- -CCCG--------CCa--CCUCUGGCg--CCCACG-CCac -5'
29108 3' -63.1 NC_006146.1 + 40433 0.68 0.539547
Target:  5'- gGGGCGGcaGcGGCCccguagGCGGGUGCGGc- -3'
miRNA:   3'- -CCCGCCacCuCUGG------CGCCCACGCCac -5'
29108 3' -63.1 NC_006146.1 + 5646 0.68 0.539547
Target:  5'- uGGCGGgggacagGGGGacgagcaccaGCCGCGGGUGCu--- -3'
miRNA:   3'- cCCGCCa------CCUC----------UGGCGCCCACGccac -5'
29108 3' -63.1 NC_006146.1 + 127582 0.68 0.529331
Target:  5'- uGGGCGGccGAGGCCGCgccggccGGGUGaGaGUGa -3'
miRNA:   3'- -CCCGCCacCUCUGGCG-------CCCACgC-CAC- -5'
29108 3' -63.1 NC_006146.1 + 41054 0.68 0.502756
Target:  5'- cGGCGGcccUGGGGGCCuCGGG-GUGGa- -3'
miRNA:   3'- cCCGCC---ACCUCUGGcGCCCaCGCCac -5'
29108 3' -63.1 NC_006146.1 + 78063 0.69 0.493726
Target:  5'- gGGGUGGUuGuAGugCucgaaGUGGGUGUGGUGg -3'
miRNA:   3'- -CCCGCCAcC-UCugG-----CGCCCACGCCAC- -5'
29108 3' -63.1 NC_006146.1 + 100008 0.69 0.4671
Target:  5'- gGGaGCGGgcacgucgGGAGGCgGCGGGguccGCGGc- -3'
miRNA:   3'- -CC-CGCCa-------CCUCUGgCGCCCa---CGCCac -5'
29108 3' -63.1 NC_006146.1 + 140081 0.69 0.461864
Target:  5'- gGGGUGGUGGAGGggguggaagagggggUgGCGGaG-GUGGUGg -3'
miRNA:   3'- -CCCGCCACCUCU---------------GgCGCC-CaCGCCAC- -5'
29108 3' -63.1 NC_006146.1 + 43591 0.68 0.548893
Target:  5'- gGGaGCGGggcgGGAGGCCGgguCGGGU-CGGg- -3'
miRNA:   3'- -CC-CGCCa---CCUCUGGC---GCCCAcGCCac -5'
29108 3' -63.1 NC_006146.1 + 77832 0.67 0.558288
Target:  5'- cGGCGGaGGGGGggGCGGG-GgGGUGg -3'
miRNA:   3'- cCCGCCaCCUCUggCGCCCaCgCCAC- -5'
29108 3' -63.1 NC_006146.1 + 92087 0.67 0.604874
Target:  5'- gGGGCGGcccggccUGGGGcuGCUGCuGGGggGCGGg- -3'
miRNA:   3'- -CCCGCC-------ACCUC--UGGCG-CCCa-CGCCac -5'
29108 3' -63.1 NC_006146.1 + 122620 0.66 0.648045
Target:  5'- gGGGCGGaGGAGGCCGgGGcccucuuucgcgccaGgacgGCGGc- -3'
miRNA:   3'- -CCCGCCaCCUCUGGCgCC---------------Ca---CGCCac -5'
29108 3' -63.1 NC_006146.1 + 26253 0.66 0.644208
Target:  5'- uGGCcagaGGUGGGGGCa-CGGGUGgCGGa- -3'
miRNA:   3'- cCCG----CCACCUCUGgcGCCCAC-GCCac -5'
29108 3' -63.1 NC_006146.1 + 10665 0.66 0.63461
Target:  5'- uGGGaCGG-GGAGGCC-CGGGgcgauacccGCGGg- -3'
miRNA:   3'- -CCC-GCCaCCUCUGGcGCCCa--------CGCCac -5'
29108 3' -63.1 NC_006146.1 + 40258 0.66 0.63269
Target:  5'- cGGGUGGgauccguaguagGGAGG-CGCGGGcggagGCGGg- -3'
miRNA:   3'- -CCCGCCa-----------CCUCUgGCGCCCa----CGCCac -5'
29108 3' -63.1 NC_006146.1 + 92266 0.67 0.615416
Target:  5'- gGGGCGGgcccggccUGGGGcuGCUGCuGGGggGCGGg- -3'
miRNA:   3'- -CCCGCC--------ACCUC--UGGCG-CCCa-CGCCac -5'
29108 3' -63.1 NC_006146.1 + 92206 0.67 0.615416
Target:  5'- gGGGCGGgcccggccUGGGGcuGCUGCuGGGggGCGGg- -3'
miRNA:   3'- -CCCGCC--------ACCUC--UGGCG-CCCa-CGCCac -5'
29108 3' -63.1 NC_006146.1 + 92146 0.67 0.615416
Target:  5'- gGGGCGGgcccggccUGGGGcuGCUGCuGGGggGCGGg- -3'
miRNA:   3'- -CCCGCC--------ACCUC--UGGCG-CCCa-CGCCac -5'
29108 3' -63.1 NC_006146.1 + 92027 0.67 0.615416
Target:  5'- gGGGCGGgcccggccUGGGGcuGCUGCuGGGggGCGGg- -3'
miRNA:   3'- -CCCGCC--------ACCUC--UGGCG-CCCa-CGCCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.