Results 1 - 20 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29108 | 3' | -63.1 | NC_006146.1 | + | 2825 | 0.66 | 0.657629 |
Target: 5'- aGGCGGUGGcggaaugucacgccaGGAgCG-GGGUGcCGGUu -3' miRNA: 3'- cCCGCCACC---------------UCUgGCgCCCAC-GCCAc -5' |
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29108 | 3' | -63.1 | NC_006146.1 | + | 5646 | 0.68 | 0.539547 |
Target: 5'- uGGCGGgggacagGGGGacgagcaccaGCCGCGGGUGCu--- -3' miRNA: 3'- cCCGCCa------CCUC----------UGGCGCCCACGccac -5' |
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29108 | 3' | -63.1 | NC_006146.1 | + | 10665 | 0.66 | 0.63461 |
Target: 5'- uGGGaCGG-GGAGGCC-CGGGgcgauacccGCGGg- -3' miRNA: 3'- -CCC-GCCaCCUCUGGcGCCCa--------CGCCac -5' |
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29108 | 3' | -63.1 | NC_006146.1 | + | 10866 | 0.69 | 0.470608 |
Target: 5'- cGGCucucaagccuugcauGG-GGAGACaGCGGG-GCGGUGg -3' miRNA: 3'- cCCG---------------CCaCCUCUGgCGCCCaCGCCAC- -5' |
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29108 | 3' | -63.1 | NC_006146.1 | + | 12873 | 0.66 | 0.672924 |
Target: 5'- uGGGUGGcUGGgcAGGCCGggucuCGGGUcugggggucuGUGGUGg -3' miRNA: 3'- -CCCGCC-ACC--UCUGGC-----GCCCA----------CGCCAC- -5' |
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29108 | 3' | -63.1 | NC_006146.1 | + | 13327 | 0.78 | 0.129384 |
Target: 5'- aGGGCGGUGGAGucgGCCGCGGccuacGCGGa- -3' miRNA: 3'- -CCCGCCACCUC---UGGCGCCca---CGCCac -5' |
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29108 | 3' | -63.1 | NC_006146.1 | + | 15951 | 0.66 | 0.63461 |
Target: 5'- uGGGUGGcUGGgcAGGCCGgucuCGGGUcugggggucuGUGGUGg -3' miRNA: 3'- -CCCGCC-ACC--UCUGGC----GCCCA----------CGCCAC- -5' |
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29108 | 3' | -63.1 | NC_006146.1 | + | 19028 | 0.66 | 0.672924 |
Target: 5'- uGGGUGGcUGGgcAGGCCGggucuCGGGUcugggggucuGUGGUGg -3' miRNA: 3'- -CCCGCC-ACC--UCUGGC-----GCCCA----------CGCCAC- -5' |
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29108 | 3' | -63.1 | NC_006146.1 | + | 22106 | 0.66 | 0.672924 |
Target: 5'- uGGGUGGcUGGgcAGGCCGggucuCGGGUcugggggucuGUGGUGg -3' miRNA: 3'- -CCCGCC-ACC--UCUGGC-----GCCCA----------CGCCAC- -5' |
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29108 | 3' | -63.1 | NC_006146.1 | + | 25184 | 0.66 | 0.672924 |
Target: 5'- uGGGUGGcUGGgcAGGCCGggucuCGGGUcugggggucuGUGGUGg -3' miRNA: 3'- -CCCGCC-ACC--UCUGGC-----GCCCA----------CGCCAC- -5' |
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29108 | 3' | -63.1 | NC_006146.1 | + | 26253 | 0.66 | 0.644208 |
Target: 5'- uGGCcagaGGUGGGGGCa-CGGGUGgCGGa- -3' miRNA: 3'- cCCG----CCACCUCUGgcGCCCAC-GCCac -5' |
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29108 | 3' | -63.1 | NC_006146.1 | + | 28262 | 0.66 | 0.672924 |
Target: 5'- uGGGUGGcUGGgcAGGCCGggucuCGGGUcugggggucuGUGGUGg -3' miRNA: 3'- -CCCGCC-ACC--UCUGGC-----GCCCA----------CGCCAC- -5' |
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29108 | 3' | -63.1 | NC_006146.1 | + | 33606 | 0.71 | 0.384213 |
Target: 5'- uGGGC-GUGGu--CCGCGGGUuCGGUGc -3' miRNA: 3'- -CCCGcCACCucuGGCGCCCAcGCCAC- -5' |
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29108 | 3' | -63.1 | NC_006146.1 | + | 33646 | 0.68 | 0.502756 |
Target: 5'- gGGGUGGgGGAGGgaG-GGGUGUGGUc -3' miRNA: 3'- -CCCGCCaCCUCUggCgCCCACGCCAc -5' |
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29108 | 3' | -63.1 | NC_006146.1 | + | 33780 | 0.67 | 0.596265 |
Target: 5'- cGGGUGGgcgugguccgaUGG-GuCCGCGGGUuuGGUGc -3' miRNA: 3'- -CCCGCC-----------ACCuCuGGCGCCCAcgCCAC- -5' |
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29108 | 3' | -63.1 | NC_006146.1 | + | 33833 | 0.68 | 0.502756 |
Target: 5'- gGGGUGGgGGAGGgaG-GGGUGUGGUc -3' miRNA: 3'- -CCCGCCaCCUCUggCgCCCACGCCAc -5' |
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29108 | 3' | -63.1 | NC_006146.1 | + | 34018 | 0.66 | 0.672924 |
Target: 5'- gGGGgGGUcGGGGCagGCGGGcGUGGUc -3' miRNA: 3'- -CCCgCCAcCUCUGg-CGCCCaCGCCAc -5' |
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29108 | 3' | -63.1 | NC_006146.1 | + | 40258 | 0.66 | 0.63269 |
Target: 5'- cGGGUGGgauccguaguagGGAGG-CGCGGGcggagGCGGg- -3' miRNA: 3'- -CCCGCCa-----------CCUCUgGCGCCCa----CGCCac -5' |
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29108 | 3' | -63.1 | NC_006146.1 | + | 40433 | 0.68 | 0.539547 |
Target: 5'- gGGGCGGcaGcGGCCccguagGCGGGUGCGGc- -3' miRNA: 3'- -CCCGCCacCuCUGG------CGCCCACGCCac -5' |
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29108 | 3' | -63.1 | NC_006146.1 | + | 41054 | 0.68 | 0.502756 |
Target: 5'- cGGCGGcccUGGGGGCCuCGGG-GUGGa- -3' miRNA: 3'- cCCGCC---ACCUCUGGcGCCCaCGCCac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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