miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29108 3' -63.1 NC_006146.1 + 41364 0.69 0.497329
Target:  5'- uGGCGGUGGuGGCCGUGGcucUGUcucugcuguuucugaGGUGg -3'
miRNA:   3'- cCCGCCACCuCUGGCGCCc--ACG---------------CCAC- -5'
29108 3' -63.1 NC_006146.1 + 43591 0.68 0.548893
Target:  5'- gGGaGCGGggcgGGAGGCCGgguCGGGU-CGGg- -3'
miRNA:   3'- -CC-CGCCa---CCUCUGGC---GCCCAcGCCac -5'
29108 3' -63.1 NC_006146.1 + 44216 0.72 0.325309
Target:  5'- gGGGCGGUgccuuGGuGACCGUcuccucuggccGGGcgGCGGUGu -3'
miRNA:   3'- -CCCGCCA-----CCuCUGGCG-----------CCCa-CGCCAC- -5'
29108 3' -63.1 NC_006146.1 + 44534 0.71 0.368841
Target:  5'- cGGGCGGa--GGACgGUGGGgggcUGCGGUGg -3'
miRNA:   3'- -CCCGCCaccUCUGgCGCCC----ACGCCAC- -5'
29108 3' -63.1 NC_006146.1 + 44705 0.66 0.653797
Target:  5'- cGGCGGUGGccguGGCCcccGCuGGccggccugaUGCGGUGg -3'
miRNA:   3'- cCCGCCACCu---CUGG---CGcCC---------ACGCCAC- -5'
29108 3' -63.1 NC_006146.1 + 44951 0.72 0.325309
Target:  5'- gGGGCGcGgGGAGGCCcCGGGggacucgaccGCGGUGg -3'
miRNA:   3'- -CCCGC-CaCCUCUGGcGCCCa---------CGCCAC- -5'
29108 3' -63.1 NC_006146.1 + 48005 0.67 0.605832
Target:  5'- uGGUGGcgGGAGGCUugGCGGGggaggcacgGCGGg- -3'
miRNA:   3'- cCCGCCa-CCUCUGG--CGCCCa--------CGCCac -5'
29108 3' -63.1 NC_006146.1 + 51412 0.66 0.62501
Target:  5'- gGGGCugaGGaguUGGAGugCGCGGGacuagaggUGUGGa- -3'
miRNA:   3'- -CCCG---CC---ACCUCugGCGCCC--------ACGCCac -5'
29108 3' -63.1 NC_006146.1 + 51454 0.67 0.558288
Target:  5'- uGGGCGGgacuagaggugUGGAGAUgGgCGGGggcUGCGGc- -3'
miRNA:   3'- -CCCGCC-----------ACCUCUGgC-GCCC---ACGCCac -5'
29108 3' -63.1 NC_006146.1 + 51889 0.7 0.416201
Target:  5'- gGGGagGGUGGAGGCUGCGucgGCGGg- -3'
miRNA:   3'- -CCCg-CCACCUCUGGCGCccaCGCCac -5'
29108 3' -63.1 NC_006146.1 + 53448 0.71 0.376474
Target:  5'- aGGGCGGUggugucugcccgGGAGG-CGCGGGUGCcucgucGGUc -3'
miRNA:   3'- -CCCGCCA------------CCUCUgGCGCCCACG------CCAc -5'
29108 3' -63.1 NC_006146.1 + 55015 0.7 0.441235
Target:  5'- cGGGCGGgaUGGGGGCgGgCGGGaUGgGGg- -3'
miRNA:   3'- -CCCGCC--ACCUCUGgC-GCCC-ACgCCac -5'
29108 3' -63.1 NC_006146.1 + 55257 0.69 0.493726
Target:  5'- cGGGCGGcccGGGcgaagcGGCuCGUGGGgcucGCGGUGg -3'
miRNA:   3'- -CCCGCCa--CCU------CUG-GCGCCCa---CGCCAC- -5'
29108 3' -63.1 NC_006146.1 + 55811 0.74 0.261489
Target:  5'- gGGGCGGUGGAagaGGCCGUcccggccuGGGUggGCGGa- -3'
miRNA:   3'- -CCCGCCACCU---CUGGCG--------CCCA--CGCCac -5'
29108 3' -63.1 NC_006146.1 + 57341 0.68 0.548893
Target:  5'- gGGGCGG-GGc--CC-CGGGUGuCGGUGa -3'
miRNA:   3'- -CCCGCCaCCucuGGcGCCCAC-GCCAC- -5'
29108 3' -63.1 NC_006146.1 + 60432 0.72 0.304359
Target:  5'- gGGGUGGaaugucagaccaUGGccgagugagcggcAGGCCGCGGGgaGCGGUGa -3'
miRNA:   3'- -CCCGCC------------ACC-------------UCUGGCGCCCa-CGCCAC- -5'
29108 3' -63.1 NC_006146.1 + 61825 0.71 0.384213
Target:  5'- gGGGCgcuGGUGGGGGCaGUGGG-GCuGGUGc -3'
miRNA:   3'- -CCCG---CCACCUCUGgCGCCCaCG-CCAC- -5'
29108 3' -63.1 NC_006146.1 + 68742 0.74 0.23306
Target:  5'- gGGGUGGUGGAGGCC-CaGGUggccaagcuucagGCGGUGc -3'
miRNA:   3'- -CCCGCCACCUCUGGcGcCCA-------------CGCCAC- -5'
29108 3' -63.1 NC_006146.1 + 71873 0.69 0.449768
Target:  5'- gGGGUGGUGGAcACUgagGUGGG-GCuGGUGg -3'
miRNA:   3'- -CCCGCCACCUcUGG---CGCCCaCG-CCAC- -5'
29108 3' -63.1 NC_006146.1 + 71909 0.69 0.449768
Target:  5'- gGGGUGGUGGAcACUgagGUGGG-GCuGGUGg -3'
miRNA:   3'- -CCCGCCACCUcUGG---CGCCCaCG-CCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.