miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29108 3' -63.1 NC_006146.1 + 170416 0.74 0.2557
Target:  5'- gGGGCGGaggGGGGGgucCCGCGGGgcccgGCGcGUGc -3'
miRNA:   3'- -CCCGCCa--CCUCU---GGCGCCCa----CGC-CAC- -5'
29108 3' -63.1 NC_006146.1 + 170194 0.68 0.543279
Target:  5'- aGGGCGGggccggggccuggcGGGGGCCagcGCGGGgucccgggGCGGg- -3'
miRNA:   3'- -CCCGCCa-------------CCUCUGG---CGCCCa-------CGCCac -5'
29108 3' -63.1 NC_006146.1 + 169754 0.73 0.279495
Target:  5'- gGGGCGGcccGGGGACCcucGCGGGggcaccgGCGcGUGg -3'
miRNA:   3'- -CCCGCCa--CCUCUGG---CGCCCa------CGC-CAC- -5'
29108 3' -63.1 NC_006146.1 + 169485 0.74 0.2557
Target:  5'- gGGGCGGaggGGGGGgucCCGCGGGgcccgGCGcGUGc -3'
miRNA:   3'- -CCCGCCa--CCUCU---GGCGCCCa----CGC-CAC- -5'
29108 3' -63.1 NC_006146.1 + 169263 0.68 0.543279
Target:  5'- aGGGCGGggccggggccuggcGGGGGCCagcGCGGGgucccgggGCGGg- -3'
miRNA:   3'- -CCCGCCa-------------CCUCUGG---CGCCCa-------CGCCac -5'
29108 3' -63.1 NC_006146.1 + 168822 0.73 0.279495
Target:  5'- gGGGCGGcccGGGGACCcucGCGGGggcaccgGCGcGUGg -3'
miRNA:   3'- -CCCGCCa--CCUCUGG---CGCCCa------CGC-CAC- -5'
29108 3' -63.1 NC_006146.1 + 168553 0.74 0.2557
Target:  5'- gGGGCGGaggGGGGGgucCCGCGGGgcccgGCGcGUGc -3'
miRNA:   3'- -CCCGCCa--CCUCU---GGCGCCCa----CGC-CAC- -5'
29108 3' -63.1 NC_006146.1 + 168331 0.68 0.543279
Target:  5'- aGGGCGGggccggggccuggcGGGGGCCagcGCGGGgucccgggGCGGg- -3'
miRNA:   3'- -CCCGCCa-------------CCUCUGG---CGCCCa-------CGCCac -5'
29108 3' -63.1 NC_006146.1 + 167890 0.73 0.279495
Target:  5'- gGGGCGGcccGGGGACCcucGCGGGggcaccgGCGcGUGg -3'
miRNA:   3'- -CCCGCCa--CCUCUGG---CGCCCa------CGC-CAC- -5'
29108 3' -63.1 NC_006146.1 + 167621 0.74 0.2557
Target:  5'- gGGGCGGaggGGGGGgucCCGCGGGgcccgGCGcGUGc -3'
miRNA:   3'- -CCCGCCa--CCUCU---GGCGCCCa----CGC-CAC- -5'
29108 3' -63.1 NC_006146.1 + 167399 0.68 0.543279
Target:  5'- aGGGCGGggccggggccuggcGGGGGCCagcGCGGGgucccgggGCGGg- -3'
miRNA:   3'- -CCCGCCa-------------CCUCUGG---CGCCCa-------CGCCac -5'
29108 3' -63.1 NC_006146.1 + 166530 0.66 0.672924
Target:  5'- cGGCcuGG-GGAGcCCGCGGG-GCcGUGg -3'
miRNA:   3'- cCCG--CCaCCUCuGGCGCCCaCGcCAC- -5'
29108 3' -63.1 NC_006146.1 + 159819 0.69 0.45839
Target:  5'- -cGUGGUGGGuAUCGCGGGUGgGGc- -3'
miRNA:   3'- ccCGCCACCUcUGGCGCCCACgCCac -5'
29108 3' -63.1 NC_006146.1 + 140081 0.69 0.461864
Target:  5'- gGGGUGGUGGAGGggguggaagagggggUgGCGGaG-GUGGUGg -3'
miRNA:   3'- -CCCGCCACCUCU---------------GgCGCC-CaCGCCAC- -5'
29108 3' -63.1 NC_006146.1 + 137379 0.68 0.539547
Target:  5'- cGGGCacaaccuaGGgagGGAGGCCGggaGGGUGCuGGg- -3'
miRNA:   3'- -CCCG--------CCa--CCUCUGGCg--CCCACG-CCac -5'
29108 3' -63.1 NC_006146.1 + 132983 1.09 0.000832
Target:  5'- gGGGCGGUGGAGACCGCGGGUGCGGUGa -3'
miRNA:   3'- -CCCGCCACCUCUGGCGCCCACGCCAC- -5'
29108 3' -63.1 NC_006146.1 + 132408 0.68 0.502756
Target:  5'- gGGGaUGGUGGgccAGACacgGUGGGUGUGGa- -3'
miRNA:   3'- -CCC-GCCACC---UCUGg--CGCCCACGCCac -5'
29108 3' -63.1 NC_006146.1 + 131553 0.66 0.62501
Target:  5'- uGGUGGUGG-GACgC-CGGGUGguuUGGUGa -3'
miRNA:   3'- cCCGCCACCuCUG-GcGCCCAC---GCCAC- -5'
29108 3' -63.1 NC_006146.1 + 127582 0.68 0.529331
Target:  5'- uGGGCGGccGAGGCCGCgccggccGGGUGaGaGUGa -3'
miRNA:   3'- -CCCGCCacCUCUGGCG-------CCCACgC-CAC- -5'
29108 3' -63.1 NC_006146.1 + 122620 0.66 0.648045
Target:  5'- gGGGCGGaGGAGGCCGgGGcccucuuucgcgccaGgacgGCGGc- -3'
miRNA:   3'- -CCCGCCaCCUCUGGCgCC---------------Ca---CGCCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.