miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29108 3' -63.1 NC_006146.1 + 132983 1.09 0.000832
Target:  5'- gGGGCGGUGGAGACCGCGGGUGCGGUGa -3'
miRNA:   3'- -CCCGCCACCUCUGGCGCCCACGCCAC- -5'
29108 3' -63.1 NC_006146.1 + 13327 0.78 0.129384
Target:  5'- aGGGCGGUGGAGucgGCCGCGGccuacGCGGa- -3'
miRNA:   3'- -CCCGCCACCUC---UGGCGCCca---CGCCac -5'
29108 3' -63.1 NC_006146.1 + 68742 0.74 0.23306
Target:  5'- gGGGUGGUGGAGGCC-CaGGUggccaagcuucagGCGGUGc -3'
miRNA:   3'- -CCCGCCACCUCUGGcGcCCA-------------CGCCAC- -5'
29108 3' -63.1 NC_006146.1 + 115162 0.74 0.238964
Target:  5'- cGGGCGGUGGAGAUCuuGGGcguguacGCGGa- -3'
miRNA:   3'- -CCCGCCACCUCUGGcgCCCa------CGCCac -5'
29108 3' -63.1 NC_006146.1 + 101908 0.74 0.255127
Target:  5'- uGGGUggGGUuuagaaaugcgccGGuGGCCGCGGGgGCGGUGa -3'
miRNA:   3'- -CCCG--CCA-------------CCuCUGGCGCCCaCGCCAC- -5'
29108 3' -63.1 NC_006146.1 + 170416 0.74 0.2557
Target:  5'- gGGGCGGaggGGGGGgucCCGCGGGgcccgGCGcGUGc -3'
miRNA:   3'- -CCCGCCa--CCUCU---GGCGCCCa----CGC-CAC- -5'
29108 3' -63.1 NC_006146.1 + 169485 0.74 0.2557
Target:  5'- gGGGCGGaggGGGGGgucCCGCGGGgcccgGCGcGUGc -3'
miRNA:   3'- -CCCGCCa--CCUCU---GGCGCCCa----CGC-CAC- -5'
29108 3' -63.1 NC_006146.1 + 168553 0.74 0.2557
Target:  5'- gGGGCGGaggGGGGGgucCCGCGGGgcccgGCGcGUGc -3'
miRNA:   3'- -CCCGCCa--CCUCU---GGCGCCCa----CGC-CAC- -5'
29108 3' -63.1 NC_006146.1 + 167621 0.74 0.2557
Target:  5'- gGGGCGGaggGGGGGgucCCGCGGGgcccgGCGcGUGc -3'
miRNA:   3'- -CCCGCCa--CCUCU---GGCGCCCa----CGC-CAC- -5'
29108 3' -63.1 NC_006146.1 + 55811 0.74 0.261489
Target:  5'- gGGGCGGUGGAagaGGCCGUcccggccuGGGUggGCGGa- -3'
miRNA:   3'- -CCCGCCACCU---CUGGCG--------CCCA--CGCCac -5'
29108 3' -63.1 NC_006146.1 + 169754 0.73 0.279495
Target:  5'- gGGGCGGcccGGGGACCcucGCGGGggcaccgGCGcGUGg -3'
miRNA:   3'- -CCCGCCa--CCUCUGG---CGCCCa------CGC-CAC- -5'
29108 3' -63.1 NC_006146.1 + 167890 0.73 0.279495
Target:  5'- gGGGCGGcccGGGGACCcucGCGGGggcaccgGCGcGUGg -3'
miRNA:   3'- -CCCGCCa--CCUCUGG---CGCCCa------CGC-CAC- -5'
29108 3' -63.1 NC_006146.1 + 168822 0.73 0.279495
Target:  5'- gGGGCGGcccGGGGACCcucGCGGGggcaccgGCGcGUGg -3'
miRNA:   3'- -CCCGCCa--CCUCUGG---CGCCCa------CGC-CAC- -5'
29108 3' -63.1 NC_006146.1 + 105196 0.73 0.298474
Target:  5'- gGGGcCGG-GGAG-CCGgGGGUGCccGGUGc -3'
miRNA:   3'- -CCC-GCCaCCUCuGGCgCCCACG--CCAC- -5'
29108 3' -63.1 NC_006146.1 + 60432 0.72 0.304359
Target:  5'- gGGGUGGaaugucagaccaUGGccgagugagcggcAGGCCGCGGGgaGCGGUGa -3'
miRNA:   3'- -CCCGCC------------ACC-------------UCUGGCGCCCa-CGCCAC- -5'
29108 3' -63.1 NC_006146.1 + 44951 0.72 0.325309
Target:  5'- gGGGCGcGgGGAGGCCcCGGGggacucgaccGCGGUGg -3'
miRNA:   3'- -CCCGC-CaCCUCUGGcGCCCa---------CGCCAC- -5'
29108 3' -63.1 NC_006146.1 + 44216 0.72 0.325309
Target:  5'- gGGGCGGUgccuuGGuGACCGUcuccucuggccGGGcgGCGGUGu -3'
miRNA:   3'- -CCCGCCA-----CCuCUGGCG-----------CCCa-CGCCAC- -5'
29108 3' -63.1 NC_006146.1 + 44534 0.71 0.368841
Target:  5'- cGGGCGGa--GGACgGUGGGgggcUGCGGUGg -3'
miRNA:   3'- -CCCGCCaccUCUGgCGCCC----ACGCCAC- -5'
29108 3' -63.1 NC_006146.1 + 53448 0.71 0.376474
Target:  5'- aGGGCGGUggugucugcccgGGAGG-CGCGGGUGCcucgucGGUc -3'
miRNA:   3'- -CCCGCCA------------CCUCUgGCGCCCACG------CCAc -5'
29108 3' -63.1 NC_006146.1 + 108603 0.71 0.383434
Target:  5'- uGGGCucucccaGGUaGGGGuCCGCGGaG-GCGGUGg -3'
miRNA:   3'- -CCCG-------CCA-CCUCuGGCGCC-CaCGCCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.