miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2911 3' -61.5 NC_001493.1 + 39531 1.09 0.001032
Target:  5'- aGAGACCCGACCCGGGAACGACCGCCGg -3'
miRNA:   3'- -CUCUGGGCUGGGCCCUUGCUGGCGGC- -5'
2911 3' -61.5 NC_001493.1 + 12843 0.76 0.201688
Target:  5'- aGAGACCCGAUUCucGAACGGCuCGCCGa -3'
miRNA:   3'- -CUCUGGGCUGGGccCUUGCUG-GCGGC- -5'
2911 3' -61.5 NC_001493.1 + 128397 0.76 0.201688
Target:  5'- aGAGACCCGAUUCucGAACGGCuCGCCGa -3'
miRNA:   3'- -CUCUGGGCUGGGccCUUGCUG-GCGGC- -5'
2911 3' -61.5 NC_001493.1 + 110504 0.74 0.243312
Target:  5'- cGAG-CCCGcGCCCGGagugaaacucGAugGGCCGCCGc -3'
miRNA:   3'- -CUCuGGGC-UGGGCC----------CUugCUGGCGGC- -5'
2911 3' -61.5 NC_001493.1 + 10900 0.74 0.266683
Target:  5'- gGAGGCCCGugUCGGGuaucCGAuccUCGCCGa -3'
miRNA:   3'- -CUCUGGGCugGGCCCuu--GCU---GGCGGC- -5'
2911 3' -61.5 NC_001493.1 + 126454 0.74 0.266683
Target:  5'- gGAGGCCCGugUCGGGuaucCGAuccUCGCCGa -3'
miRNA:   3'- -CUCUGGGCugGGCCCuu--GCU---GGCGGC- -5'
2911 3' -61.5 NC_001493.1 + 27614 0.74 0.272803
Target:  5'- gGGGACCCGcgcggGCUCGGGAuCGGCC-CCGa -3'
miRNA:   3'- -CUCUGGGC-----UGGGCCCUuGCUGGcGGC- -5'
2911 3' -61.5 NC_001493.1 + 20898 0.73 0.285379
Target:  5'- gGGGAucCCCGguGCCgCGGGAGCGuacCCGCCGu -3'
miRNA:   3'- -CUCU--GGGC--UGG-GCCCUUGCu--GGCGGC- -5'
2911 3' -61.5 NC_001493.1 + 38643 0.72 0.332982
Target:  5'- uGAGACCCGACCUGGcGAACuGGgaCGUCa -3'
miRNA:   3'- -CUCUGGGCUGGGCC-CUUG-CUg-GCGGc -5'
2911 3' -61.5 NC_001493.1 + 16094 0.72 0.332982
Target:  5'- cGGGgCCGuCCCGGGGcuCGACCGCuCGa -3'
miRNA:   3'- cUCUgGGCuGGGCCCUu-GCUGGCG-GC- -5'
2911 3' -61.5 NC_001493.1 + 131649 0.72 0.332982
Target:  5'- cGGGgCCGuCCCGGGGcuCGACCGCuCGa -3'
miRNA:   3'- cUCUgGGCuGGGCCCUu-GCUGGCG-GC- -5'
2911 3' -61.5 NC_001493.1 + 87317 0.72 0.332982
Target:  5'- cGGugCCGAuCCCGGGggUGACCauacgcgcgcGCCc -3'
miRNA:   3'- cUCugGGCU-GGGCCCuuGCUGG----------CGGc -5'
2911 3' -61.5 NC_001493.1 + 121177 0.72 0.340239
Target:  5'- uGGAUgCCGACCuCGGGGAUugGGCCGUCGa -3'
miRNA:   3'- cUCUG-GGCUGG-GCCCUUG--CUGGCGGC- -5'
2911 3' -61.5 NC_001493.1 + 5623 0.72 0.340239
Target:  5'- uGGAUgCCGACCuCGGGGAUugGGCCGUCGa -3'
miRNA:   3'- cUCUG-GGCUGG-GCCCUUG--CUGGCGGC- -5'
2911 3' -61.5 NC_001493.1 + 54931 0.72 0.347611
Target:  5'- -uGAUCaCGuACCCGGGAACGGgccCCGCCc -3'
miRNA:   3'- cuCUGG-GC-UGGGCCCUUGCU---GGCGGc -5'
2911 3' -61.5 NC_001493.1 + 129712 0.72 0.362694
Target:  5'- uGGGCCCGcACCCGGGuuaauACCGCUGc -3'
miRNA:   3'- cUCUGGGC-UGGGCCCuugc-UGGCGGC- -5'
2911 3' -61.5 NC_001493.1 + 14158 0.72 0.362694
Target:  5'- uGGGCCCGcACCCGGGuuaauACCGCUGc -3'
miRNA:   3'- cUCUGGGC-UGGGCCCuugc-UGGCGGC- -5'
2911 3' -61.5 NC_001493.1 + 88042 0.72 0.362694
Target:  5'- cGAGAUCgGuaaCCGGGAACauACCGCCGg -3'
miRNA:   3'- -CUCUGGgCug-GGCCCUUGc-UGGCGGC- -5'
2911 3' -61.5 NC_001493.1 + 129735 0.71 0.375867
Target:  5'- -uGACCCGGCCCucaacgagcucgcgGGGGACGAggacgUCGUCGg -3'
miRNA:   3'- cuCUGGGCUGGG--------------CCCUUGCU-----GGCGGC- -5'
2911 3' -61.5 NC_001493.1 + 128760 0.71 0.378225
Target:  5'- gGAGACCCGACa-GGGcccucuACGuACCGCCc -3'
miRNA:   3'- -CUCUGGGCUGggCCCu-----UGC-UGGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.