miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2911 3' -61.5 NC_001493.1 + 3001 0.67 0.593835
Target:  5'- aGGGCgcgaUCGACCCGGGGucauCGGUCGCCa -3'
miRNA:   3'- cUCUG----GGCUGGGCCCUu---GCUGGCGGc -5'
2911 3' -61.5 NC_001493.1 + 3121 0.68 0.56471
Target:  5'- cGGACCUcgGACUCGGGAA-GAaccucacccCCGCCGa -3'
miRNA:   3'- cUCUGGG--CUGGGCCCUUgCU---------GGCGGC- -5'
2911 3' -61.5 NC_001493.1 + 5623 0.72 0.340239
Target:  5'- uGGAUgCCGACCuCGGGGAUugGGCCGUCGa -3'
miRNA:   3'- cUCUG-GGCUGG-GCCCUUG--CUGGCGGC- -5'
2911 3' -61.5 NC_001493.1 + 7546 0.67 0.593835
Target:  5'- aGGGCUC-ACCCGGGAugcacuuucGgGACCGCuCGg -3'
miRNA:   3'- cUCUGGGcUGGGCCCU---------UgCUGGCG-GC- -5'
2911 3' -61.5 NC_001493.1 + 8128 0.68 0.544545
Target:  5'- gGAGAgCCCGACCCGcGGcguggacgaagugGACGG-CGCCu -3'
miRNA:   3'- -CUCU-GGGCUGGGC-CC-------------UUGCUgGCGGc -5'
2911 3' -61.5 NC_001493.1 + 8500 0.66 0.685757
Target:  5'- cGAGACgCgCGGCCCcuccacguucgaagcGGGcACGGCgCGCCa -3'
miRNA:   3'- -CUCUG-G-GCUGGG---------------CCCuUGCUG-GCGGc -5'
2911 3' -61.5 NC_001493.1 + 9137 0.67 0.603603
Target:  5'- -cGACCgCGcuCCCGGGGAUGGCgGCg- -3'
miRNA:   3'- cuCUGG-GCu-GGGCCCUUGCUGgCGgc -5'
2911 3' -61.5 NC_001493.1 + 10900 0.74 0.266683
Target:  5'- gGAGGCCCGugUCGGGuaucCGAuccUCGCCGa -3'
miRNA:   3'- -CUCUGGGCugGGCCCuu--GCU---GGCGGC- -5'
2911 3' -61.5 NC_001493.1 + 12697 0.66 0.661406
Target:  5'- cGGACgCGACCCGGGAgucucccACGGgggaGCCu -3'
miRNA:   3'- cUCUGgGCUGGGCCCU-------UGCUgg--CGGc -5'
2911 3' -61.5 NC_001493.1 + 12843 0.76 0.201688
Target:  5'- aGAGACCCGAUUCucGAACGGCuCGCCGa -3'
miRNA:   3'- -CUCUGGGCUGGGccCUUGCUG-GCGGC- -5'
2911 3' -61.5 NC_001493.1 + 13206 0.71 0.378225
Target:  5'- gGAGACCCGACa-GGGcccucuACGuACCGCCc -3'
miRNA:   3'- -CUCUGGGCUGggCCCu-----UGC-UGGCGGc -5'
2911 3' -61.5 NC_001493.1 + 13584 0.67 0.59774
Target:  5'- -cGACCCGuCCCGaGGcucacgaagcggugcAACGAUCGCgCGg -3'
miRNA:   3'- cuCUGGGCuGGGC-CC---------------UUGCUGGCG-GC- -5'
2911 3' -61.5 NC_001493.1 + 14153 0.68 0.555081
Target:  5'- aGGGACgCGcCCCGGGuGACGACCucgugacccugGCCc -3'
miRNA:   3'- -CUCUGgGCuGGGCCC-UUGCUGG-----------CGGc -5'
2911 3' -61.5 NC_001493.1 + 14158 0.72 0.362694
Target:  5'- uGGGCCCGcACCCGGGuuaauACCGCUGc -3'
miRNA:   3'- cUCUGGGC-UGGGCCCuugc-UGGCGGC- -5'
2911 3' -61.5 NC_001493.1 + 15249 0.71 0.394197
Target:  5'- -cGACCCG-CCCGGGAuCGGCUucCCGa -3'
miRNA:   3'- cuCUGGGCuGGGCCCUuGCUGGc-GGC- -5'
2911 3' -61.5 NC_001493.1 + 16094 0.72 0.332982
Target:  5'- cGGGgCCGuCCCGGGGcuCGACCGCuCGa -3'
miRNA:   3'- cUCUgGGCuGGGCCCUu-GCUGGCG-GC- -5'
2911 3' -61.5 NC_001493.1 + 17603 0.66 0.691568
Target:  5'- uGGGACCCucGACCUcagaGGGggUGcCCGCa- -3'
miRNA:   3'- -CUCUGGG--CUGGG----CCCuuGCuGGCGgc -5'
2911 3' -61.5 NC_001493.1 + 19073 0.66 0.672144
Target:  5'- aGGACCaaccCCCGGGAGaGACC-CCGg -3'
miRNA:   3'- cUCUGGgcu-GGGCCCUUgCUGGcGGC- -5'
2911 3' -61.5 NC_001493.1 + 20898 0.73 0.285379
Target:  5'- gGGGAucCCCGguGCCgCGGGAGCGuacCCGCCGu -3'
miRNA:   3'- -CUCU--GGGC--UGG-GCCCUUGCu--GGCGGC- -5'
2911 3' -61.5 NC_001493.1 + 21226 0.67 0.584093
Target:  5'- aAGGCCCGACCUuca---GGCCGCCGc -3'
miRNA:   3'- cUCUGGGCUGGGcccuugCUGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.