miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2911 5' -55.4 NC_001493.1 + 82095 0.66 0.916563
Target:  5'- cACGGAGCUCGUcga-GGGUCuucUCCGc -3'
miRNA:   3'- cUGCCUCGAGCAcuagCUCAGc--AGGC- -5'
2911 5' -55.4 NC_001493.1 + 37546 0.66 0.910683
Target:  5'- gGAUGGAGgggUCGUcGAcCGGGUCGcCCGg -3'
miRNA:   3'- -CUGCCUCg--AGCA-CUaGCUCAGCaGGC- -5'
2911 5' -55.4 NC_001493.1 + 113323 0.67 0.870547
Target:  5'- cACGGGGaUCGUGccgggucugcgcGUCGAGUCGagugUCCGu -3'
miRNA:   3'- cUGCCUCgAGCAC------------UAGCUCAGC----AGGC- -5'
2911 5' -55.4 NC_001493.1 + 8883 0.68 0.863083
Target:  5'- uGAUGGAGCgCGUGG-CGGG--GUCCGg -3'
miRNA:   3'- -CUGCCUCGaGCACUaGCUCagCAGGC- -5'
2911 5' -55.4 NC_001493.1 + 124437 0.68 0.863083
Target:  5'- uGAUGGAGCgCGUGG-CGGG--GUCCGg -3'
miRNA:   3'- -CUGCCUCGaGCACUaGCUCagCAGGC- -5'
2911 5' -55.4 NC_001493.1 + 69592 0.68 0.863083
Target:  5'- cGCGGccucGGCUCGUucgcGAUCGGGgacaCGUCCc -3'
miRNA:   3'- cUGCC----UCGAGCA----CUAGCUCa---GCAGGc -5'
2911 5' -55.4 NC_001493.1 + 123173 0.68 0.863083
Target:  5'- uGAUGGGGCUCGUGug-----CGUCCGc -3'
miRNA:   3'- -CUGCCUCGAGCACuagcucaGCAGGC- -5'
2911 5' -55.4 NC_001493.1 + 7618 0.68 0.863083
Target:  5'- uGAUGGGGCUCGUGug-----CGUCCGc -3'
miRNA:   3'- -CUGCCUCGAGCACuagcucaGCAGGC- -5'
2911 5' -55.4 NC_001493.1 + 42138 0.68 0.855412
Target:  5'- cACGGAGCUCauc-UCGAGUgGUCaCGg -3'
miRNA:   3'- cUGCCUCGAGcacuAGCUCAgCAG-GC- -5'
2911 5' -55.4 NC_001493.1 + 22466 0.68 0.854633
Target:  5'- cACGGGGgUUGUGuGUCGGGUuuccucgUGUCCGa -3'
miRNA:   3'- cUGCCUCgAGCAC-UAGCUCA-------GCAGGC- -5'
2911 5' -55.4 NC_001493.1 + 52857 0.68 0.839469
Target:  5'- uGAUGGA-CUCGgccagGAaaGGGUCGUCCGc -3'
miRNA:   3'- -CUGCCUcGAGCa----CUagCUCAGCAGGC- -5'
2911 5' -55.4 NC_001493.1 + 111271 0.69 0.796455
Target:  5'- -cCGG-GCUCGUaaaCGAGUCGUCUGu -3'
miRNA:   3'- cuGCCuCGAGCAcuaGCUCAGCAGGC- -5'
2911 5' -55.4 NC_001493.1 + 33333 0.7 0.75933
Target:  5'- cGGCGGGGacccUGaUGAUCGGGUCGUCgGc -3'
miRNA:   3'- -CUGCCUCga--GC-ACUAGCUCAGCAGgC- -5'
2911 5' -55.4 NC_001493.1 + 76395 0.71 0.670121
Target:  5'- cGCGGAGCUCGUGAacCGGGUCa---- -3'
miRNA:   3'- cUGCCUCGAGCACUa-GCUCAGcaggc -5'
2911 5' -55.4 NC_001493.1 + 10809 0.72 0.62928
Target:  5'- --gGGAGCUCGcgcGAUCGGGcgCGUCCc -3'
miRNA:   3'- cugCCUCGAGCa--CUAGCUCa-GCAGGc -5'
2911 5' -55.4 NC_001493.1 + 126363 0.72 0.62928
Target:  5'- --gGGAGCUCGcgcGAUCGGGcgCGUCCc -3'
miRNA:   3'- cugCCUCGAGCa--CUAGCUCa-GCAGGc -5'
2911 5' -55.4 NC_001493.1 + 39495 1.08 0.003918
Target:  5'- gGACGGAGCUCGUGAUCGAGUCGUCCGu -3'
miRNA:   3'- -CUGCCUCGAGCACUAGCUCAGCAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.