miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29119 3' -54.9 NC_006146.1 + 41521 0.66 0.942859
Target:  5'- cGGCug-ACGCCCGGGAUcCGcGGGCu- -3'
miRNA:   3'- -CCGcgaUGUGGGCCCUAaGC-UUCGuc -5'
29119 3' -54.9 NC_006146.1 + 43571 0.72 0.722562
Target:  5'- cGGCGUacugaGCGuuCCCGGGGagCGggGCGGg -3'
miRNA:   3'- -CCGCGa----UGU--GGGCCCUaaGCuuCGUC- -5'
29119 3' -54.9 NC_006146.1 + 44069 0.67 0.917268
Target:  5'- gGGCGcCUGCAUgCCGGGAc-UGggGUGGu -3'
miRNA:   3'- -CCGC-GAUGUG-GGCCCUaaGCuuCGUC- -5'
29119 3' -54.9 NC_006146.1 + 44952 0.7 0.824256
Target:  5'- gGGCGCggggagGC-CCCGGGGgacUCGAccGCGGu -3'
miRNA:   3'- -CCGCGa-----UGuGGGCCCUa--AGCUu-CGUC- -5'
29119 3' -54.9 NC_006146.1 + 48704 0.66 0.959136
Target:  5'- cGGgGaCUACGUCUGGGAgugagGAGGCAGa -3'
miRNA:   3'- -CCgC-GAUGUGGGCCCUaag--CUUCGUC- -5'
29119 3' -54.9 NC_006146.1 + 50011 0.7 0.798128
Target:  5'- aGGCGauccgguugaUGCAgCCGGGGU-CGAGGCGc -3'
miRNA:   3'- -CCGCg---------AUGUgGGCCCUAaGCUUCGUc -5'
29119 3' -54.9 NC_006146.1 + 52317 0.67 0.928214
Target:  5'- aGGUGCUG-ACCCugacgugggccGGGGUgccCGggGCGGc -3'
miRNA:   3'- -CCGCGAUgUGGG-----------CCCUAa--GCuuCGUC- -5'
29119 3' -54.9 NC_006146.1 + 53741 0.66 0.947272
Target:  5'- cGCgGCUGCGCCgGGG---CGAAGaCGGg -3'
miRNA:   3'- cCG-CGAUGUGGgCCCuaaGCUUC-GUC- -5'
29119 3' -54.9 NC_006146.1 + 55376 0.75 0.521409
Target:  5'- cGCGCgggACGCCCGGGGcacCGAGGcCAGc -3'
miRNA:   3'- cCGCGa--UGUGGGCCCUaa-GCUUC-GUC- -5'
29119 3' -54.9 NC_006146.1 + 56746 0.66 0.947272
Target:  5'- cGCGCgggACGUCCGGGGccugaucgCGGAGCAc -3'
miRNA:   3'- cCGCGa--UGUGGGCCCUaa------GCUUCGUc -5'
29119 3' -54.9 NC_006146.1 + 61309 0.69 0.83593
Target:  5'- cGGCGCgcgGCguccuGCCCGGGuggccuagccggCGAGGCAc -3'
miRNA:   3'- -CCGCGa--UG-----UGGGCCCuaa---------GCUUCGUc -5'
29119 3' -54.9 NC_006146.1 + 61826 0.66 0.956925
Target:  5'- gGGCGCUggugggggcagugggGCuggugCCGGGAcuccCGggGCAGa -3'
miRNA:   3'- -CCGCGA---------------UGug---GGCCCUaa--GCuuCGUC- -5'
29119 3' -54.9 NC_006146.1 + 64227 0.72 0.692704
Target:  5'- aGGCacauCUGCGCCUGGGc--CGggGCGGg -3'
miRNA:   3'- -CCGc---GAUGUGGGCCCuaaGCuuCGUC- -5'
29119 3' -54.9 NC_006146.1 + 66661 0.69 0.83263
Target:  5'- aGUGCUAUAUCCugaGGGGggCGggGCAc -3'
miRNA:   3'- cCGCGAUGUGGG---CCCUaaGCuuCGUc -5'
29119 3' -54.9 NC_006146.1 + 70998 0.69 0.83263
Target:  5'- -cCGCUcuuGCGCCCGGGGggcaGAGGCGc -3'
miRNA:   3'- ccGCGA---UGUGGGCCCUaag-CUUCGUc -5'
29119 3' -54.9 NC_006146.1 + 74563 0.74 0.571018
Target:  5'- aGGCGCUGCA-CCGGGcugUCGAAGg-- -3'
miRNA:   3'- -CCGCGAUGUgGGCCCua-AGCUUCguc -5'
29119 3' -54.9 NC_006146.1 + 75384 0.67 0.938213
Target:  5'- aGGCGCcGCACCCGacagcucccGGAUaUgGAGGCc- -3'
miRNA:   3'- -CCGCGaUGUGGGC---------CCUA-AgCUUCGuc -5'
29119 3' -54.9 NC_006146.1 + 92012 0.67 0.928214
Target:  5'- uGGgGCUGCugCUGGGGggCGGgcccGGCc- -3'
miRNA:   3'- -CCgCGAUGugGGCCCUaaGCU----UCGuc -5'
29119 3' -54.9 NC_006146.1 + 92042 0.67 0.928214
Target:  5'- uGGgGCUGCugCUGGGGggCGGgcccGGCc- -3'
miRNA:   3'- -CCgCGAUGugGGCCCUaaGCU----UCGuc -5'
29119 3' -54.9 NC_006146.1 + 92072 0.68 0.905379
Target:  5'- uGGgGCUGCugCUGGGGggCGGcccGGCc- -3'
miRNA:   3'- -CCgCGAUGugGGCCCUaaGCU---UCGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.