miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29119 3' -54.9 NC_006146.1 + 2963 0.66 0.947272
Target:  5'- aGGCGCUggACACCgCGaGGUaCGAguacGGCAGu -3'
miRNA:   3'- -CCGCGA--UGUGG-GCcCUAaGCU----UCGUC- -5'
29119 3' -54.9 NC_006146.1 + 7647 0.66 0.951454
Target:  5'- uGGUcuucuuuCUGaACCCGGGGUUCcuGGAGCAGc -3'
miRNA:   3'- -CCGc------GAUgUGGGCCCUAAG--CUUCGUC- -5'
29119 3' -54.9 NC_006146.1 + 12987 0.7 0.78911
Target:  5'- cGGC-CUAgGCCCGGGGagUGGAGgGGg -3'
miRNA:   3'- -CCGcGAUgUGGGCCCUaaGCUUCgUC- -5'
29119 3' -54.9 NC_006146.1 + 13556 0.69 0.840823
Target:  5'- aGGCGCcGgGCgCCGGGcugCGcAAGCAGg -3'
miRNA:   3'- -CCGCGaUgUG-GGCCCuaaGC-UUCGUC- -5'
29119 3' -54.9 NC_006146.1 + 16065 0.7 0.78911
Target:  5'- cGGC-CUAgGCCCGGGGagUGGAGgGGg -3'
miRNA:   3'- -CCGcGAUgUGGGCCCUaaGCUUCgUC- -5'
29119 3' -54.9 NC_006146.1 + 18454 0.66 0.942859
Target:  5'- cGGUGCagaUGCucuACCCGGGGaUCGAcgAGCu- -3'
miRNA:   3'- -CCGCG---AUG---UGGGCCCUaAGCU--UCGuc -5'
29119 3' -54.9 NC_006146.1 + 19143 0.7 0.78911
Target:  5'- cGGC-CUAgGCCCGGGGagUGGAGgGGg -3'
miRNA:   3'- -CCGcGAUgUGGGCCCUaaGCUUCgUC- -5'
29119 3' -54.9 NC_006146.1 + 20585 0.67 0.917268
Target:  5'- cGGC-CUGCGCCCGGG---CGAGGa-- -3'
miRNA:   3'- -CCGcGAUGUGGGCCCuaaGCUUCguc -5'
29119 3' -54.9 NC_006146.1 + 21279 0.74 0.601343
Target:  5'- uGGUGCUggcggACGCCCGGGuaaagGAGGCGGc -3'
miRNA:   3'- -CCGCGA-----UGUGGGCCCuaag-CUUCGUC- -5'
29119 3' -54.9 NC_006146.1 + 22221 0.7 0.78911
Target:  5'- cGGC-CUAgGCCCGGGGagUGGAGgGGg -3'
miRNA:   3'- -CCGcGAUgUGGGCCCUaaGCUUCgUC- -5'
29119 3' -54.9 NC_006146.1 + 24086 0.73 0.652234
Target:  5'- uGGCGCggccuCGCCUGGGAcgcgggUCGAgGGCGGc -3'
miRNA:   3'- -CCGCGau---GUGGGCCCUa-----AGCU-UCGUC- -5'
29119 3' -54.9 NC_006146.1 + 25299 0.7 0.78911
Target:  5'- cGGC-CUAgGCCCGGGGagUGGAGgGGg -3'
miRNA:   3'- -CCGcGAUgUGGGCCCUaaGCUUCgUC- -5'
29119 3' -54.9 NC_006146.1 + 27353 0.66 0.951454
Target:  5'- uGGCGCgGCAaggCCGGGGggCGucuggacAGCAGc -3'
miRNA:   3'- -CCGCGaUGUg--GGCCCUaaGCu------UCGUC- -5'
29119 3' -54.9 NC_006146.1 + 28377 0.7 0.78911
Target:  5'- cGGC-CUAgGCCCGGGGagUGGAGgGGg -3'
miRNA:   3'- -CCGcGAUgUGGGCCCUaaGCUUCgUC- -5'
29119 3' -54.9 NC_006146.1 + 28517 0.66 0.947272
Target:  5'- aGCGCaacUGCuaaACCCGGaGAaUCGuAGCAGa -3'
miRNA:   3'- cCGCG---AUG---UGGGCC-CUaAGCuUCGUC- -5'
29119 3' -54.9 NC_006146.1 + 32037 0.66 0.947272
Target:  5'- aGGCGCUgGCccaggucaugACCCGGGcgUgGcGAGCAu -3'
miRNA:   3'- -CCGCGA-UG----------UGGGCCCuaAgC-UUCGUc -5'
29119 3' -54.9 NC_006146.1 + 32125 0.66 0.955407
Target:  5'- gGGUGCcACGucacCCCGGGGUgcuGggGUGGg -3'
miRNA:   3'- -CCGCGaUGU----GGGCCCUAag-CuuCGUC- -5'
29119 3' -54.9 NC_006146.1 + 33004 0.67 0.917268
Target:  5'- cGcCGCUACcCCCGGGGgauggUUaAAGCGGg -3'
miRNA:   3'- cC-GCGAUGuGGGCCCUa----AGcUUCGUC- -5'
29119 3' -54.9 NC_006146.1 + 33997 0.69 0.871651
Target:  5'- -cCGgUGCACCUggaaggcaggggGGGggUCGggGCAGg -3'
miRNA:   3'- ccGCgAUGUGGG------------CCCuaAGCuuCGUC- -5'
29119 3' -54.9 NC_006146.1 + 39861 0.66 0.942859
Target:  5'- gGGgGCUGugUGCCCGGGGgagGAGGCuGa -3'
miRNA:   3'- -CCgCGAU--GUGGGCCCUaagCUUCGuC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.