miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29119 3' -54.9 NC_006146.1 + 142340 1.1 0.00361
Target:  5'- uGGCGCUACACCCGGGAUUCGAAGCAGu -3'
miRNA:   3'- -CCGCGAUGUGGGCCCUAAGCUUCGUC- -5'
29119 3' -54.9 NC_006146.1 + 154684 0.7 0.824256
Target:  5'- gGGCGCUGCugCUGGGuggUCugcgcccaGAuGCAGc -3'
miRNA:   3'- -CCGCGAUGugGGCCCua-AG--------CUuCGUC- -5'
29119 3' -54.9 NC_006146.1 + 161255 0.69 0.835107
Target:  5'- cGGCaGCUaccugugccgcauGCGCCUGGGGgagaccgaggucaCGAAGCAGg -3'
miRNA:   3'- -CCG-CGA-------------UGUGGGCCCUaa-----------GCUUCGUC- -5'
29119 3' -54.9 NC_006146.1 + 157600 0.66 0.959136
Target:  5'- uGGUGCccaGCACgUGGGGguagUCGcGGGCGGg -3'
miRNA:   3'- -CCGCGa--UGUGgGCCCUa---AGC-UUCGUC- -5'
29119 3' -54.9 NC_006146.1 + 169985 0.78 0.368854
Target:  5'- cGGCGC-GCGCCCGGGGUcccggGggGCGGc -3'
miRNA:   3'- -CCGCGaUGUGGGCCCUAag---CuuCGUC- -5'
29119 3' -54.9 NC_006146.1 + 55376 0.75 0.521409
Target:  5'- cGCGCgggACGCCCGGGGcacCGAGGcCAGc -3'
miRNA:   3'- cCGCGa--UGUGGGCCCUaa-GCUUC-GUC- -5'
29119 3' -54.9 NC_006146.1 + 119942 0.74 0.601343
Target:  5'- cGGCGCUGCugCCGGaGGUcUCGguGgGGg -3'
miRNA:   3'- -CCGCGAUGugGGCC-CUA-AGCuuCgUC- -5'
29119 3' -54.9 NC_006146.1 + 162385 0.73 0.672535
Target:  5'- uGGCGCgcccGCGCCCGGGAcccCGGugGGcCAGg -3'
miRNA:   3'- -CCGCGa---UGUGGGCCCUaa-GCU--UC-GUC- -5'
29119 3' -54.9 NC_006146.1 + 19143 0.7 0.78911
Target:  5'- cGGC-CUAgGCCCGGGGagUGGAGgGGg -3'
miRNA:   3'- -CCGcGAUgUGGGCCCUaaGCUUCgUC- -5'
29119 3' -54.9 NC_006146.1 + 152062 0.7 0.824256
Target:  5'- --gGCaGCGCCCGGGGUcUgGAAGCAc -3'
miRNA:   3'- ccgCGaUGUGGGCCCUA-AgCUUCGUc -5'
29119 3' -54.9 NC_006146.1 + 25299 0.7 0.78911
Target:  5'- cGGC-CUAgGCCCGGGGagUGGAGgGGg -3'
miRNA:   3'- -CCGcGAUgUGGGCCCUaaGCUUCgUC- -5'
29119 3' -54.9 NC_006146.1 + 16065 0.7 0.78911
Target:  5'- cGGC-CUAgGCCCGGGGagUGGAGgGGg -3'
miRNA:   3'- -CCGcGAUgUGGGCCCUaaGCUUCgUC- -5'
29119 3' -54.9 NC_006146.1 + 167189 0.78 0.368854
Target:  5'- cGGCGC-GCGCCCGGGGUcccggGggGCGGc -3'
miRNA:   3'- -CCGCGaUGUGGGCCCUAag---CuuCGUC- -5'
29119 3' -54.9 NC_006146.1 + 28377 0.7 0.78911
Target:  5'- cGGC-CUAgGCCCGGGGagUGGAGgGGg -3'
miRNA:   3'- -CCGcGAUgUGGGCCCUaaGCUUCgUC- -5'
29119 3' -54.9 NC_006146.1 + 168121 0.78 0.368854
Target:  5'- cGGCGC-GCGCCCGGGGUcccggGggGCGGc -3'
miRNA:   3'- -CCGCGaUGUGGGCCCUAag---CuuCGUC- -5'
29119 3' -54.9 NC_006146.1 + 12987 0.7 0.78911
Target:  5'- cGGC-CUAgGCCCGGGGagUGGAGgGGg -3'
miRNA:   3'- -CCGcGAUgUGGGCCCUaaGCUUCgUC- -5'
29119 3' -54.9 NC_006146.1 + 44952 0.7 0.824256
Target:  5'- gGGCGCggggagGC-CCCGGGGgacUCGAccGCGGu -3'
miRNA:   3'- -CCGCGa-----UGuGGGCCCUa--AGCUu-CGUC- -5'
29119 3' -54.9 NC_006146.1 + 144129 0.69 0.83263
Target:  5'- uGGCGCcGCaACCUGGGAcgUCGucuGCAu -3'
miRNA:   3'- -CCGCGaUG-UGGGCCCUa-AGCuu-CGUc -5'
29119 3' -54.9 NC_006146.1 + 169053 0.78 0.368854
Target:  5'- cGGCGC-GCGCCCGGGGUcccggGggGCGGc -3'
miRNA:   3'- -CCGCGaUGUGGGCCCUAag---CuuCGUC- -5'
29119 3' -54.9 NC_006146.1 + 120062 0.74 0.571018
Target:  5'- uGGCGCUGCuGCgCCGGGAagaCGGAGCc- -3'
miRNA:   3'- -CCGCGAUG-UG-GGCCCUaa-GCUUCGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.