miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29119 3' -54.9 NC_006146.1 + 142340 1.1 0.00361
Target:  5'- uGGCGCUACACCCGGGAUUCGAAGCAGu -3'
miRNA:   3'- -CCGCGAUGUGGGCCCUAAGCUUCGUC- -5'
29119 3' -54.9 NC_006146.1 + 168121 0.78 0.368854
Target:  5'- cGGCGC-GCGCCCGGGGUcccggGggGCGGc -3'
miRNA:   3'- -CCGCGaUGUGGGCCCUAag---CuuCGUC- -5'
29119 3' -54.9 NC_006146.1 + 169985 0.78 0.368854
Target:  5'- cGGCGC-GCGCCCGGGGUcccggGggGCGGc -3'
miRNA:   3'- -CCGCGaUGUGGGCCCUAag---CuuCGUC- -5'
29119 3' -54.9 NC_006146.1 + 167189 0.78 0.368854
Target:  5'- cGGCGC-GCGCCCGGGGUcccggGggGCGGc -3'
miRNA:   3'- -CCGCGaUGUGGGCCCUAag---CuuCGUC- -5'
29119 3' -54.9 NC_006146.1 + 169053 0.78 0.368854
Target:  5'- cGGCGC-GCGCCCGGGGUcccggGggGCGGc -3'
miRNA:   3'- -CCGCGaUGUGGGCCCUAag---CuuCGUC- -5'
29119 3' -54.9 NC_006146.1 + 120361 0.76 0.482963
Target:  5'- aGGUGCc-CACCCGGGAccUGGAGCGGc -3'
miRNA:   3'- -CCGCGauGUGGGCCCUaaGCUUCGUC- -5'
29119 3' -54.9 NC_006146.1 + 55376 0.75 0.521409
Target:  5'- cGCGCgggACGCCCGGGGcacCGAGGcCAGc -3'
miRNA:   3'- cCGCGa--UGUGGGCCCUaa-GCUUC-GUC- -5'
29119 3' -54.9 NC_006146.1 + 120062 0.74 0.571018
Target:  5'- uGGCGCUGCuGCgCCGGGAagaCGGAGCc- -3'
miRNA:   3'- -CCGCGAUG-UG-GGCCCUaa-GCUUCGuc -5'
29119 3' -54.9 NC_006146.1 + 74563 0.74 0.571018
Target:  5'- aGGCGCUGCA-CCGGGcugUCGAAGg-- -3'
miRNA:   3'- -CCGCGAUGUgGGCCCua-AGCUUCguc -5'
29119 3' -54.9 NC_006146.1 + 21279 0.74 0.601343
Target:  5'- uGGUGCUggcggACGCCCGGGuaaagGAGGCGGc -3'
miRNA:   3'- -CCGCGA-----UGUGGGCCCuaag-CUUCGUC- -5'
29119 3' -54.9 NC_006146.1 + 119942 0.74 0.601343
Target:  5'- cGGCGCUGCugCCGGaGGUcUCGguGgGGg -3'
miRNA:   3'- -CCGCGAUGugGGCC-CUA-AGCuuCgUC- -5'
29119 3' -54.9 NC_006146.1 + 24086 0.73 0.652234
Target:  5'- uGGCGCggccuCGCCUGGGAcgcgggUCGAgGGCGGc -3'
miRNA:   3'- -CCGCGau---GUGGGCCCUa-----AGCU-UCGUC- -5'
29119 3' -54.9 NC_006146.1 + 162385 0.73 0.672535
Target:  5'- uGGCGCgcccGCGCCCGGGAcccCGGugGGcCAGg -3'
miRNA:   3'- -CCGCGa---UGUGGGCCCUaa-GCU--UC-GUC- -5'
29119 3' -54.9 NC_006146.1 + 114590 0.72 0.68264
Target:  5'- cGGCGCagcUACgGCCUGGGccaccUCGAGGCGGc -3'
miRNA:   3'- -CCGCG---AUG-UGGGCCCua---AGCUUCGUC- -5'
29119 3' -54.9 NC_006146.1 + 64227 0.72 0.692704
Target:  5'- aGGCacauCUGCGCCUGGGc--CGggGCGGg -3'
miRNA:   3'- -CCGc---GAUGUGGGCCCuaaGCuuCGUC- -5'
29119 3' -54.9 NC_006146.1 + 43571 0.72 0.722562
Target:  5'- cGGCGUacugaGCGuuCCCGGGGagCGggGCGGg -3'
miRNA:   3'- -CCGCGa----UGU--GGGCCCUaaGCuuCGUC- -5'
29119 3' -54.9 NC_006146.1 + 92311 0.71 0.742096
Target:  5'- uGGgGCUGCugCUGGGGggCGGgcccggccuggGGCAGc -3'
miRNA:   3'- -CCgCGAUGugGGCCCUaaGCU-----------UCGUC- -5'
29119 3' -54.9 NC_006146.1 + 129643 0.71 0.761251
Target:  5'- gGGCGCgugcucCGCCCGGGAauggCGAgAGCGc -3'
miRNA:   3'- -CCGCGau----GUGGGCCCUaa--GCU-UCGUc -5'
29119 3' -54.9 NC_006146.1 + 12987 0.7 0.78911
Target:  5'- cGGC-CUAgGCCCGGGGagUGGAGgGGg -3'
miRNA:   3'- -CCGcGAUgUGGGCCCUaaGCUUCgUC- -5'
29119 3' -54.9 NC_006146.1 + 16065 0.7 0.78911
Target:  5'- cGGC-CUAgGCCCGGGGagUGGAGgGGg -3'
miRNA:   3'- -CCGcGAUgUGGGCCCUaaGCUUCgUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.