miRNA display CGI


Results 41 - 60 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29121 3' -54.5 NC_006146.1 + 49541 0.7 0.800301
Target:  5'- cCUCUGGGgGCgGAGGccacgccGGCCAGGCccagcaUGGc -3'
miRNA:   3'- -GAGACCCaCGgUUCU-------UUGGUCCG------ACC- -5'
29121 3' -54.5 NC_006146.1 + 51172 0.66 0.949733
Target:  5'- gCUgUGGGUGUggaAGGGggUCugcGGGCUGGc -3'
miRNA:   3'- -GAgACCCACGg--UUCUuuGG---UCCGACC- -5'
29121 3' -54.5 NC_006146.1 + 51645 0.68 0.888967
Target:  5'- gCUCUGGacucCCAGGggGCCAgGGCcGGu -3'
miRNA:   3'- -GAGACCcac-GGUUCuuUGGU-CCGaCC- -5'
29121 3' -54.5 NC_006146.1 + 55167 0.67 0.914421
Target:  5'- -------cGCCGGGAGGCCAGGgUGGa -3'
miRNA:   3'- gagacccaCGGUUCUUUGGUCCgACC- -5'
29121 3' -54.5 NC_006146.1 + 55403 0.67 0.925716
Target:  5'- gCUCcGGGaccCCAGGAcguACCuGGCUGGc -3'
miRNA:   3'- -GAGaCCCac-GGUUCUu--UGGuCCGACC- -5'
29121 3' -54.5 NC_006146.1 + 56672 0.7 0.792136
Target:  5'- -cCUGaGGUGCCGGGcccCCugGGGCUGGc -3'
miRNA:   3'- gaGAC-CCACGGUUCuuuGG--UCCGACC- -5'
29121 3' -54.5 NC_006146.1 + 61417 0.66 0.940845
Target:  5'- -gCUGcGGUgGCCAacgcGGGcacGGCCGGGCUGa -3'
miRNA:   3'- gaGAC-CCA-CGGU----UCU---UUGGUCCGACc -5'
29121 3' -54.5 NC_006146.1 + 64155 0.66 0.961317
Target:  5'- gUCaGGGccuCgGAGucuGCCAGGCUGGg -3'
miRNA:   3'- gAGaCCCac-GgUUCuu-UGGUCCGACC- -5'
29121 3' -54.5 NC_006146.1 + 65205 0.71 0.7641
Target:  5'- gCUCUGGGgGCCcuGGGAGCCcGGGCg-- -3'
miRNA:   3'- -GAGACCCaCGGu-UCUUUGG-UCCGacc -5'
29121 3' -54.5 NC_006146.1 + 65485 0.69 0.859861
Target:  5'- ---cGGGUGCUGAGcuGGCCggcgugGGGCUGGu -3'
miRNA:   3'- gagaCCCACGGUUCu-UUGG------UCCGACC- -5'
29121 3' -54.5 NC_006146.1 + 66931 0.69 0.838311
Target:  5'- -cCUGGGauugaaguacucgUGCCGGGAGAcaaagagcugcucgcCCAGGCUGu -3'
miRNA:   3'- gaGACCC-------------ACGGUUCUUU---------------GGUCCGACc -5'
29121 3' -54.5 NC_006146.1 + 67224 0.69 0.835828
Target:  5'- -cCUGGccgGCCAggcacaGGAAGCCacggAGGCUGGg -3'
miRNA:   3'- gaGACCca-CGGU------UCUUUGG----UCCGACC- -5'
29121 3' -54.5 NC_006146.1 + 70831 0.69 0.835828
Target:  5'- gUCUGGG-GCCAAGGgccAAgCGGGCccGGu -3'
miRNA:   3'- gAGACCCaCGGUUCU---UUgGUCCGa-CC- -5'
29121 3' -54.5 NC_006146.1 + 71355 0.66 0.952215
Target:  5'- -gCUgGGGUGCCAguGGGAACCGucgucuccugacuGCUGGu -3'
miRNA:   3'- gaGA-CCCACGGU--UCUUUGGUc------------CGACC- -5'
29121 3' -54.5 NC_006146.1 + 77553 0.68 0.902165
Target:  5'- -aCUGGGagacGCCGAccAACCAGGCcgUGGc -3'
miRNA:   3'- gaGACCCa---CGGUUcuUUGGUCCG--ACC- -5'
29121 3' -54.5 NC_006146.1 + 80009 0.67 0.936044
Target:  5'- uCUCaUGGGc-CCAGGuugaGGGCCAGGCUcGGg -3'
miRNA:   3'- -GAG-ACCCacGGUUC----UUUGGUCCGA-CC- -5'
29121 3' -54.5 NC_006146.1 + 81659 0.72 0.694972
Target:  5'- gCUCggaGGGUGCCGGGGAAgC-GGCgGGa -3'
miRNA:   3'- -GAGa--CCCACGGUUCUUUgGuCCGaCC- -5'
29121 3' -54.5 NC_006146.1 + 91770 0.7 0.827433
Target:  5'- --gUGGGUGCCuGGGguGCCGuGCUGGc -3'
miRNA:   3'- gagACCCACGG-UUCuuUGGUcCGACC- -5'
29121 3' -54.5 NC_006146.1 + 92505 0.67 0.920189
Target:  5'- gCUCagagUGGGUugaGCCAuGAGGCUugAGGUUGGa -3'
miRNA:   3'- -GAG----ACCCA---CGGUuCUUUGG--UCCGACC- -5'
29121 3' -54.5 NC_006146.1 + 96957 0.68 0.908412
Target:  5'- gUCUGGGcGCCAGGGuguCgGGGCa-- -3'
miRNA:   3'- gAGACCCaCGGUUCUuu-GgUCCGacc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.