Results 41 - 60 of 128 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29121 | 3' | -54.5 | NC_006146.1 | + | 49541 | 0.7 | 0.800301 |
Target: 5'- cCUCUGGGgGCgGAGGccacgccGGCCAGGCccagcaUGGc -3' miRNA: 3'- -GAGACCCaCGgUUCU-------UUGGUCCG------ACC- -5' |
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29121 | 3' | -54.5 | NC_006146.1 | + | 51172 | 0.66 | 0.949733 |
Target: 5'- gCUgUGGGUGUggaAGGGggUCugcGGGCUGGc -3' miRNA: 3'- -GAgACCCACGg--UUCUuuGG---UCCGACC- -5' |
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29121 | 3' | -54.5 | NC_006146.1 | + | 51645 | 0.68 | 0.888967 |
Target: 5'- gCUCUGGacucCCAGGggGCCAgGGCcGGu -3' miRNA: 3'- -GAGACCcac-GGUUCuuUGGU-CCGaCC- -5' |
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29121 | 3' | -54.5 | NC_006146.1 | + | 55167 | 0.67 | 0.914421 |
Target: 5'- -------cGCCGGGAGGCCAGGgUGGa -3' miRNA: 3'- gagacccaCGGUUCUUUGGUCCgACC- -5' |
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29121 | 3' | -54.5 | NC_006146.1 | + | 55403 | 0.67 | 0.925716 |
Target: 5'- gCUCcGGGaccCCAGGAcguACCuGGCUGGc -3' miRNA: 3'- -GAGaCCCac-GGUUCUu--UGGuCCGACC- -5' |
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29121 | 3' | -54.5 | NC_006146.1 | + | 56672 | 0.7 | 0.792136 |
Target: 5'- -cCUGaGGUGCCGGGcccCCugGGGCUGGc -3' miRNA: 3'- gaGAC-CCACGGUUCuuuGG--UCCGACC- -5' |
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29121 | 3' | -54.5 | NC_006146.1 | + | 61417 | 0.66 | 0.940845 |
Target: 5'- -gCUGcGGUgGCCAacgcGGGcacGGCCGGGCUGa -3' miRNA: 3'- gaGAC-CCA-CGGU----UCU---UUGGUCCGACc -5' |
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29121 | 3' | -54.5 | NC_006146.1 | + | 64155 | 0.66 | 0.961317 |
Target: 5'- gUCaGGGccuCgGAGucuGCCAGGCUGGg -3' miRNA: 3'- gAGaCCCac-GgUUCuu-UGGUCCGACC- -5' |
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29121 | 3' | -54.5 | NC_006146.1 | + | 65205 | 0.71 | 0.7641 |
Target: 5'- gCUCUGGGgGCCcuGGGAGCCcGGGCg-- -3' miRNA: 3'- -GAGACCCaCGGu-UCUUUGG-UCCGacc -5' |
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29121 | 3' | -54.5 | NC_006146.1 | + | 65485 | 0.69 | 0.859861 |
Target: 5'- ---cGGGUGCUGAGcuGGCCggcgugGGGCUGGu -3' miRNA: 3'- gagaCCCACGGUUCu-UUGG------UCCGACC- -5' |
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29121 | 3' | -54.5 | NC_006146.1 | + | 66931 | 0.69 | 0.838311 |
Target: 5'- -cCUGGGauugaaguacucgUGCCGGGAGAcaaagagcugcucgcCCAGGCUGu -3' miRNA: 3'- gaGACCC-------------ACGGUUCUUU---------------GGUCCGACc -5' |
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29121 | 3' | -54.5 | NC_006146.1 | + | 67224 | 0.69 | 0.835828 |
Target: 5'- -cCUGGccgGCCAggcacaGGAAGCCacggAGGCUGGg -3' miRNA: 3'- gaGACCca-CGGU------UCUUUGG----UCCGACC- -5' |
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29121 | 3' | -54.5 | NC_006146.1 | + | 70831 | 0.69 | 0.835828 |
Target: 5'- gUCUGGG-GCCAAGGgccAAgCGGGCccGGu -3' miRNA: 3'- gAGACCCaCGGUUCU---UUgGUCCGa-CC- -5' |
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29121 | 3' | -54.5 | NC_006146.1 | + | 71355 | 0.66 | 0.952215 |
Target: 5'- -gCUgGGGUGCCAguGGGAACCGucgucuccugacuGCUGGu -3' miRNA: 3'- gaGA-CCCACGGU--UCUUUGGUc------------CGACC- -5' |
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29121 | 3' | -54.5 | NC_006146.1 | + | 77553 | 0.68 | 0.902165 |
Target: 5'- -aCUGGGagacGCCGAccAACCAGGCcgUGGc -3' miRNA: 3'- gaGACCCa---CGGUUcuUUGGUCCG--ACC- -5' |
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29121 | 3' | -54.5 | NC_006146.1 | + | 80009 | 0.67 | 0.936044 |
Target: 5'- uCUCaUGGGc-CCAGGuugaGGGCCAGGCUcGGg -3' miRNA: 3'- -GAG-ACCCacGGUUC----UUUGGUCCGA-CC- -5' |
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29121 | 3' | -54.5 | NC_006146.1 | + | 81659 | 0.72 | 0.694972 |
Target: 5'- gCUCggaGGGUGCCGGGGAAgC-GGCgGGa -3' miRNA: 3'- -GAGa--CCCACGGUUCUUUgGuCCGaCC- -5' |
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29121 | 3' | -54.5 | NC_006146.1 | + | 91770 | 0.7 | 0.827433 |
Target: 5'- --gUGGGUGCCuGGGguGCCGuGCUGGc -3' miRNA: 3'- gagACCCACGG-UUCuuUGGUcCGACC- -5' |
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29121 | 3' | -54.5 | NC_006146.1 | + | 92505 | 0.67 | 0.920189 |
Target: 5'- gCUCagagUGGGUugaGCCAuGAGGCUugAGGUUGGa -3' miRNA: 3'- -GAG----ACCCA---CGGUuCUUUGG--UCCGACC- -5' |
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29121 | 3' | -54.5 | NC_006146.1 | + | 96957 | 0.68 | 0.908412 |
Target: 5'- gUCUGGGcGCCAGGGuguCgGGGCa-- -3' miRNA: 3'- gAGACCCaCGGUUCUuu-GgUCCGacc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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