miRNA display CGI


Results 21 - 40 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29121 3' -54.5 NC_006146.1 + 27624 0.72 0.715128
Target:  5'- -aCUGGGUgGCCAGGGAAguuCCGGGCc-- -3'
miRNA:   3'- gaGACCCA-CGGUUCUUU---GGUCCGacc -5'
29121 3' -54.5 NC_006146.1 + 28260 0.68 0.874853
Target:  5'- -gCUGGGUgGCUggGcAGGCCGGGuCUcGGg -3'
miRNA:   3'- gaGACCCA-CGGuuC-UUUGGUCC-GA-CC- -5'
29121 3' -54.5 NC_006146.1 + 28358 0.66 0.957684
Target:  5'- gCUCUGGGaGUCAgAGAGucgGCCuAGGCccgGGg -3'
miRNA:   3'- -GAGACCCaCGGU-UCUU---UGG-UCCGa--CC- -5'
29121 3' -54.5 NC_006146.1 + 28807 0.67 0.925716
Target:  5'- cCUCaGGGUGCCuccccGGGucCCAGGCcagccGGa -3'
miRNA:   3'- -GAGaCCCACGGu----UCUuuGGUCCGa----CC- -5'
29121 3' -54.5 NC_006146.1 + 33098 0.72 0.694972
Target:  5'- gCUCUGGGgcaGCCGGGugGCCGccGGCgGGu -3'
miRNA:   3'- -GAGACCCa--CGGUUCuuUGGU--CCGaCC- -5'
29121 3' -54.5 NC_006146.1 + 33148 0.68 0.908412
Target:  5'- gCUCcGGGUGggGGGugGCCcGGCUGGg -3'
miRNA:   3'- -GAGaCCCACggUUCuuUGGuCCGACC- -5'
29121 3' -54.5 NC_006146.1 + 33208 0.68 0.902165
Target:  5'- ---gGGGgagGCCGgaggGGGAGCCgggaugGGGCUGGg -3'
miRNA:   3'- gagaCCCa--CGGU----UCUUUGG------UCCGACC- -5'
29121 3' -54.5 NC_006146.1 + 33272 0.68 0.908412
Target:  5'- gCUCcGGGUGggGGGugGCCcGGCUGGg -3'
miRNA:   3'- -GAGaCCCACggUUCuuUGGuCCGACC- -5'
29121 3' -54.5 NC_006146.1 + 35938 0.66 0.961317
Target:  5'- -gCUGGGUGUgugauguuUcGGAuuCCGGGCUGa -3'
miRNA:   3'- gaGACCCACG--------GuUCUuuGGUCCGACc -5'
29121 3' -54.5 NC_006146.1 + 36154 0.69 0.852049
Target:  5'- aCUCUGGGa--CGAGcguuGGCCuGGCUGGc -3'
miRNA:   3'- -GAGACCCacgGUUCu---UUGGuCCGACC- -5'
29121 3' -54.5 NC_006146.1 + 39939 0.66 0.961317
Target:  5'- aUCUGGGcGCCuccuGACCcugaugacacGGCUGGg -3'
miRNA:   3'- gAGACCCaCGGuucuUUGGu---------CCGACC- -5'
29121 3' -54.5 NC_006146.1 + 41069 0.68 0.882022
Target:  5'- cCUCgGGGUggagggagGCCAgggacagcgagGGGAGCCAGGCgugcaGGg -3'
miRNA:   3'- -GAGaCCCA--------CGGU-----------UCUUUGGUCCGa----CC- -5'
29121 3' -54.5 NC_006146.1 + 41496 0.68 0.902165
Target:  5'- cCUUgGGGUGCgCGGGGAcgacGCCcGGCUGa -3'
miRNA:   3'- -GAGaCCCACG-GUUCUU----UGGuCCGACc -5'
29121 3' -54.5 NC_006146.1 + 41589 0.68 0.902165
Target:  5'- -gCUGGccgagGCgGAGAGGCCcgggGGGCUGGu -3'
miRNA:   3'- gaGACCca---CGgUUCUUUGG----UCCGACC- -5'
29121 3' -54.5 NC_006146.1 + 42438 0.66 0.953824
Target:  5'- -gCUGGGUGCgCGccgccagcauGGcgGCCGGGUcgUGGa -3'
miRNA:   3'- gaGACCCACG-GU----------UCuuUGGUCCG--ACC- -5'
29121 3' -54.5 NC_006146.1 + 44763 0.7 0.827433
Target:  5'- gCUCUcgggggagaGGGUGCCGu---GCCGGGCUcaGGg -3'
miRNA:   3'- -GAGA---------CCCACGGUucuuUGGUCCGA--CC- -5'
29121 3' -54.5 NC_006146.1 + 45117 0.66 0.953824
Target:  5'- gCUCggccGGUGaCCGccGGGAGCCuugggcuuugcGGGCUGGg -3'
miRNA:   3'- -GAGac--CCAC-GGU--UCUUUGG-----------UCCGACC- -5'
29121 3' -54.5 NC_006146.1 + 46890 0.7 0.792136
Target:  5'- -cCUGGGUGuCCGAcGAGcguagGCCGGGUUGa -3'
miRNA:   3'- gaGACCCAC-GGUU-CUU-----UGGUCCGACc -5'
29121 3' -54.5 NC_006146.1 + 47040 0.67 0.925716
Target:  5'- -cCUGGGUGCgAgaAGggGCCGGucGCcGGu -3'
miRNA:   3'- gaGACCCACGgU--UCuuUGGUC--CGaCC- -5'
29121 3' -54.5 NC_006146.1 + 48620 0.7 0.818858
Target:  5'- gUCgucGGGUGCCGuGggGgCGGGCUccGGg -3'
miRNA:   3'- gAGa--CCCACGGUuCuuUgGUCCGA--CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.