miRNA display CGI


Results 21 - 40 of 128 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29121 3' -54.5 NC_006146.1 + 143238 1.1 0.003817
Target:  5'- gCUCUGGGUGCCAAGAAACCAGGCUGGc -3'
miRNA:   3'- -GAGACCCACGGUUCUUUGGUCCGACC- -5'
29121 3' -54.5 NC_006146.1 + 47040 0.67 0.925716
Target:  5'- -cCUGGGUGCgAgaAGggGCCGGucGCcGGu -3'
miRNA:   3'- gaGACCCACGgU--UCuuUGGUC--CGaCC- -5'
29121 3' -54.5 NC_006146.1 + 112548 0.67 0.925716
Target:  5'- -gCUGGuGUaGaCGAGGuccauGCCAGGCUGGu -3'
miRNA:   3'- gaGACC-CA-CgGUUCUu----UGGUCCGACC- -5'
29121 3' -54.5 NC_006146.1 + 2943 0.68 0.882022
Target:  5'- -gCUGGGaGUCAucAGAcACCAGGCgcUGGa -3'
miRNA:   3'- gaGACCCaCGGU--UCUuUGGUCCG--ACC- -5'
29121 3' -54.5 NC_006146.1 + 36154 0.69 0.852049
Target:  5'- aCUCUGGGa--CGAGcguuGGCCuGGCUGGc -3'
miRNA:   3'- -GAGACCCacgGUUCu---UUGGuCCGACC- -5'
29121 3' -54.5 NC_006146.1 + 28807 0.67 0.925716
Target:  5'- cCUCaGGGUGCCuccccGGGucCCAGGCcagccGGa -3'
miRNA:   3'- -GAGaCCCACGGu----UCUuuGGUCCGa----CC- -5'
29121 3' -54.5 NC_006146.1 + 16495 0.67 0.925716
Target:  5'- cCUCaGGGUGCCuccccGGGucCCAGGCcagccGGa -3'
miRNA:   3'- -GAGaCCCACGGu----UCUuuGGUCCGa----CC- -5'
29121 3' -54.5 NC_006146.1 + 48620 0.7 0.818858
Target:  5'- gUCgucGGGUGCCGuGggGgCGGGCUccGGg -3'
miRNA:   3'- gAGa--CCCACGGUuCuuUgGUCCGA--CC- -5'
29121 3' -54.5 NC_006146.1 + 77553 0.68 0.902165
Target:  5'- -aCUGGGagacGCCGAccAACCAGGCcgUGGc -3'
miRNA:   3'- gaGACCCa---CGGUUcuUUGGUCCG--ACC- -5'
29121 3' -54.5 NC_006146.1 + 155568 0.68 0.902165
Target:  5'- gCUCgcgcGGGgcgcccGCCAGGGGcacACCGgGGCUGGc -3'
miRNA:   3'- -GAGa---CCCa-----CGGUUCUU---UGGU-CCGACC- -5'
29121 3' -54.5 NC_006146.1 + 46890 0.7 0.792136
Target:  5'- -cCUGGGUGuCCGAcGAGcguagGCCGGGUUGa -3'
miRNA:   3'- gaGACCCAC-GGUU-CUU-----UGGUCCGACc -5'
29121 3' -54.5 NC_006146.1 + 65205 0.71 0.7641
Target:  5'- gCUCUGGGgGCCcuGGGAGCCcGGGCg-- -3'
miRNA:   3'- -GAGACCCaCGGu-UCUUUGG-UCCGacc -5'
29121 3' -54.5 NC_006146.1 + 135366 0.67 0.931
Target:  5'- gCUC-GGG-GCC-GGggGCCGGGUgccccUGGg -3'
miRNA:   3'- -GAGaCCCaCGGuUCuuUGGUCCG-----ACC- -5'
29121 3' -54.5 NC_006146.1 + 135180 0.67 0.931
Target:  5'- gCUC-GGG-GCC-GGggGCCGGGUgccccUGGg -3'
miRNA:   3'- -GAGaCCCaCGGuUCuuUGGUCCG-----ACC- -5'
29121 3' -54.5 NC_006146.1 + 96957 0.68 0.908412
Target:  5'- gUCUGGGcGCCAGGGuguCgGGGCa-- -3'
miRNA:   3'- gAGACCCaCGGUUCUuu-GgUCCGacc -5'
29121 3' -54.5 NC_006146.1 + 12871 0.68 0.874853
Target:  5'- -gCUGGGUgGCUggGcAGGCCGGGuCUcGGg -3'
miRNA:   3'- gaGACCCA-CGGuuC-UUUGGUCC-GA-CC- -5'
29121 3' -54.5 NC_006146.1 + 122325 0.69 0.859861
Target:  5'- gUCUGGcucuuGUGCCAGGggGCCGaGCUc- -3'
miRNA:   3'- gAGACC-----CACGGUUCuuUGGUcCGAcc -5'
29121 3' -54.5 NC_006146.1 + 153402 0.72 0.719127
Target:  5'- ---aGGGUGCCAAGGGAguucccgggggcgggUguGGCUGGc -3'
miRNA:   3'- gagaCCCACGGUUCUUU---------------GguCCGACC- -5'
29121 3' -54.5 NC_006146.1 + 144394 0.68 0.895683
Target:  5'- -cCUGGGUGUguGGGGucCCAGGCa-- -3'
miRNA:   3'- gaGACCCACGguUCUUu-GGUCCGacc -5'
29121 3' -54.5 NC_006146.1 + 157639 0.68 0.902165
Target:  5'- -cCUGGGUcuugggcaccaGCCccuGGACCAGGCUGa -3'
miRNA:   3'- gaGACCCA-----------CGGuucUUUGGUCCGACc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.