miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29121 3' -54.5 NC_006146.1 + 143238 1.1 0.003817
Target:  5'- gCUCUGGGUGCCAAGAAACCAGGCUGGc -3'
miRNA:   3'- -GAGACCCACGGUUCUUUGGUCCGACC- -5'
29121 3' -54.5 NC_006146.1 + 22104 0.68 0.874853
Target:  5'- -gCUGGGUgGCUggGcAGGCCGGGuCUcGGg -3'
miRNA:   3'- gaGACCCA-CGGuuC-UUUGGUCC-GA-CC- -5'
29121 3' -54.5 NC_006146.1 + 28260 0.68 0.874853
Target:  5'- -gCUGGGUgGCUggGcAGGCCGGGuCUcGGg -3'
miRNA:   3'- gaGACCCA-CGGuuC-UUUGGUCC-GA-CC- -5'
29121 3' -54.5 NC_006146.1 + 28358 0.66 0.957684
Target:  5'- gCUCUGGGaGUCAgAGAGucgGCCuAGGCccgGGg -3'
miRNA:   3'- -GAGACCCaCGGU-UCUU---UGG-UCCGa--CC- -5'
29121 3' -54.5 NC_006146.1 + 153402 0.72 0.719127
Target:  5'- ---aGGGUGCCAAGGGAguucccgggggcgggUguGGCUGGc -3'
miRNA:   3'- gagaCCCACGGUUCUUU---------------GguCCGACC- -5'
29121 3' -54.5 NC_006146.1 + 65205 0.71 0.7641
Target:  5'- gCUCUGGGgGCCcuGGGAGCCcGGGCg-- -3'
miRNA:   3'- -GAGACCCaCGGu-UCUUUGG-UCCGacc -5'
29121 3' -54.5 NC_006146.1 + 49541 0.7 0.800301
Target:  5'- cCUCUGGGgGCgGAGGccacgccGGCCAGGCccagcaUGGc -3'
miRNA:   3'- -GAGACCCaCGgUUCU-------UUGGUCCG------ACC- -5'
29121 3' -54.5 NC_006146.1 + 48620 0.7 0.818858
Target:  5'- gUCgucGGGUGCCGuGggGgCGGGCUccGGg -3'
miRNA:   3'- gAGa--CCCACGGUuCuuUgGUCCGA--CC- -5'
29121 3' -54.5 NC_006146.1 + 66931 0.69 0.838311
Target:  5'- -cCUGGGauugaaguacucgUGCCGGGAGAcaaagagcugcucgcCCAGGCUGu -3'
miRNA:   3'- gaGACCC-------------ACGGUUCUUU---------------GGUCCGACc -5'
29121 3' -54.5 NC_006146.1 + 19026 0.68 0.874853
Target:  5'- -gCUGGGUgGCUggGcAGGCCGGGuCUcGGg -3'
miRNA:   3'- gaGACCCA-CGGuuC-UUUGGUCC-GA-CC- -5'
29121 3' -54.5 NC_006146.1 + 122325 0.69 0.859861
Target:  5'- gUCUGGcucuuGUGCCAGGggGCCGaGCUc- -3'
miRNA:   3'- gAGACC-----CACGGUUCuuUGGUcCGAcc -5'
29121 3' -54.5 NC_006146.1 + 70831 0.69 0.835828
Target:  5'- gUCUGGG-GCCAAGGgccAAgCGGGCccGGu -3'
miRNA:   3'- gAGACCCaCGGUUCU---UUgGUCCGa-CC- -5'
29121 3' -54.5 NC_006146.1 + 131490 0.76 0.482958
Target:  5'- gUCUgGGGUGCCAGGGaucGACCGGGaaaGGg -3'
miRNA:   3'- gAGA-CCCACGGUUCU---UUGGUCCga-CC- -5'
29121 3' -54.5 NC_006146.1 + 65485 0.69 0.859861
Target:  5'- ---cGGGUGCUGAGcuGGCCggcgugGGGCUGGu -3'
miRNA:   3'- gagaCCCACGGUUCu-UUGG------UCCGACC- -5'
29121 3' -54.5 NC_006146.1 + 159222 0.72 0.684809
Target:  5'- aUCUGcGUGgauaCCGugGGggGCCAGGCUGGc -3'
miRNA:   3'- gAGACcCAC----GGU--UCuuUGGUCCGACC- -5'
29121 3' -54.5 NC_006146.1 + 67224 0.69 0.835828
Target:  5'- -cCUGGccgGCCAggcacaGGAAGCCacggAGGCUGGg -3'
miRNA:   3'- gaGACCca-CGGU------UCUUUGG----UCCGACC- -5'
29121 3' -54.5 NC_006146.1 + 12871 0.68 0.874853
Target:  5'- -gCUGGGUgGCUggGcAGGCCGGGuCUcGGg -3'
miRNA:   3'- gaGACCCA-CGGuuC-UUUGGUCC-GA-CC- -5'
29121 3' -54.5 NC_006146.1 + 25182 0.68 0.874853
Target:  5'- -gCUGGGUgGCUggGcAGGCCGGGuCUcGGg -3'
miRNA:   3'- gaGACCCA-CGGuuC-UUUGGUCC-GA-CC- -5'
29121 3' -54.5 NC_006146.1 + 33098 0.72 0.694972
Target:  5'- gCUCUGGGgcaGCCGGGugGCCGccGGCgGGu -3'
miRNA:   3'- -GAGACCCa--CGGUUCuuUGGU--CCGaCC- -5'
29121 3' -54.5 NC_006146.1 + 46890 0.7 0.792136
Target:  5'- -cCUGGGUGuCCGAcGAGcguagGCCGGGUUGa -3'
miRNA:   3'- gaGACCCAC-GGUU-CUU-----UGGUCCGACc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.