miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29121 3' -54.5 NC_006146.1 + 14856 0.66 0.945408
Target:  5'- ---cGGGagGCCGAGGgggcAGCCAGggaGCUGGa -3'
miRNA:   3'- gagaCCCa-CGGUUCU----UUGGUC---CGACC- -5'
29121 3' -54.5 NC_006146.1 + 61417 0.66 0.940845
Target:  5'- -gCUGcGGUgGCCAacgcGGGcacGGCCGGGCUGa -3'
miRNA:   3'- gaGAC-CCA-CGGU----UCU---UUGGUCCGACc -5'
29121 3' -54.5 NC_006146.1 + 71355 0.66 0.952215
Target:  5'- -gCUgGGGUGCCAguGGGAACCGucgucuccugacuGCUGGu -3'
miRNA:   3'- gaGA-CCCACGGU--UCUUUGGUc------------CGACC- -5'
29121 3' -54.5 NC_006146.1 + 22202 0.66 0.957684
Target:  5'- gCUCUGGGaGUCAgAGAGucgGCCuAGGCccgGGg -3'
miRNA:   3'- -GAGACCCaCGGU-UCUU---UGG-UCCGa--CC- -5'
29121 3' -54.5 NC_006146.1 + 25280 0.66 0.957684
Target:  5'- gCUCUGGGaGUCAgAGAGucgGCCuAGGCccgGGg -3'
miRNA:   3'- -GAGACCCaCGGU-UCUU---UGG-UCCGa--CC- -5'
29121 3' -54.5 NC_006146.1 + 45117 0.66 0.953824
Target:  5'- gCUCggccGGUGaCCGccGGGAGCCuugggcuuugcGGGCUGGg -3'
miRNA:   3'- -GAGac--CCAC-GGU--UCUUUGG-----------UCCGACC- -5'
29121 3' -54.5 NC_006146.1 + 16046 0.66 0.957684
Target:  5'- gCUCUGGGaGUCAgAGAGucgGCCuAGGCccgGGg -3'
miRNA:   3'- -GAGACCCaCGGU-UCUU---UGG-UCCGa--CC- -5'
29121 3' -54.5 NC_006146.1 + 19124 0.66 0.957684
Target:  5'- gCUCUGGGaGUCAgAGAGucgGCCuAGGCccgGGg -3'
miRNA:   3'- -GAGACCCaCGGU-UCUU---UGG-UCCGa--CC- -5'
29121 3' -54.5 NC_006146.1 + 28358 0.66 0.957684
Target:  5'- gCUCUGGGaGUCAgAGAGucgGCCuAGGCccgGGg -3'
miRNA:   3'- -GAGACCCaCGGU-UCUU---UGG-UCCGa--CC- -5'
29121 3' -54.5 NC_006146.1 + 39939 0.66 0.961317
Target:  5'- aUCUGGGcGCCuccuGACCcugaugacacGGCUGGg -3'
miRNA:   3'- gAGACCCaCGGuucuUUGGu---------CCGACC- -5'
29121 3' -54.5 NC_006146.1 + 11734 0.66 0.945408
Target:  5'- uCUCgGGcGUGuCCAAGAcGACCGgGGCaGGg -3'
miRNA:   3'- -GAGaCC-CAC-GGUUCU-UUGGU-CCGaCC- -5'
29121 3' -54.5 NC_006146.1 + 51172 0.66 0.949733
Target:  5'- gCUgUGGGUGUggaAGGGggUCugcGGGCUGGc -3'
miRNA:   3'- -GAgACCCACGg--UUCUuuGG---UCCGACC- -5'
29121 3' -54.5 NC_006146.1 + 23130 0.66 0.949733
Target:  5'- -cCUGGGagagGCCGGGAGcCUGGGCUu- -3'
miRNA:   3'- gaGACCCa---CGGUUCUUuGGUCCGAcc -5'
29121 3' -54.5 NC_006146.1 + 105195 0.66 0.949733
Target:  5'- ---cGGG-GCCGGGGAGCCGGGg--- -3'
miRNA:   3'- gagaCCCaCGGUUCUUUGGUCCgacc -5'
29121 3' -54.5 NC_006146.1 + 42438 0.66 0.953824
Target:  5'- -gCUGGGUGCgCGccgccagcauGGcgGCCGGGUcgUGGa -3'
miRNA:   3'- gaGACCCACG-GU----------UCuuUGGUCCG--ACC- -5'
29121 3' -54.5 NC_006146.1 + 26208 0.66 0.957684
Target:  5'- -cCUGGGaaCCAAGA--CCAGGUcgUGGa -3'
miRNA:   3'- gaGACCCacGGUUCUuuGGUCCG--ACC- -5'
29121 3' -54.5 NC_006146.1 + 11021 0.66 0.957684
Target:  5'- cCUCgaGGcccucUGCgAGGAGACCAGGgaGGu -3'
miRNA:   3'- -GAGa-CCc----ACGgUUCUUUGGUCCgaCC- -5'
29121 3' -54.5 NC_006146.1 + 35938 0.66 0.961317
Target:  5'- -gCUGGGUGUgugauguuUcGGAuuCCGGGCUGa -3'
miRNA:   3'- gaGACCCACG--------GuUCUuuGGUCCGACc -5'
29121 3' -54.5 NC_006146.1 + 64155 0.66 0.961317
Target:  5'- gUCaGGGccuCgGAGucuGCCAGGCUGGg -3'
miRNA:   3'- gAGaCCCac-GgUUCuu-UGGUCCGACC- -5'
29121 3' -54.5 NC_006146.1 + 80009 0.67 0.936044
Target:  5'- uCUCaUGGGc-CCAGGuugaGGGCCAGGCUcGGg -3'
miRNA:   3'- -GAG-ACCCacGGUUC----UUUGGUCCGA-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.