miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29121 3' -54.5 NC_006146.1 + 143238 1.1 0.003817
Target:  5'- gCUCUGGGUGCCAAGAAACCAGGCUGGc -3'
miRNA:   3'- -GAGACCCACGGUUCUUUGGUCCGACC- -5'
29121 3' -54.5 NC_006146.1 + 131490 0.76 0.482958
Target:  5'- gUCUgGGGUGCCAGGGaucGACCGGGaaaGGg -3'
miRNA:   3'- gAGA-CCCACGGUUCU---UUGGUCCga-CC- -5'
29121 3' -54.5 NC_006146.1 + 147584 0.74 0.581155
Target:  5'- -cCUGGGgugGCCGGGGAgggguggggagugGCCAGGgaGGa -3'
miRNA:   3'- gaGACCCa--CGGUUCUU-------------UGGUCCgaCC- -5'
29121 3' -54.5 NC_006146.1 + 141428 0.74 0.581155
Target:  5'- -cCUGGGgugGCCGGGGAgggguggggagugGCCAGGgaGGa -3'
miRNA:   3'- gaGACCCa--CGGUUCUU-------------UGGUCCgaCC- -5'
29121 3' -54.5 NC_006146.1 + 156817 0.74 0.581155
Target:  5'- -cCUGGGgugGCCGGGGAgggguggggagugGCCAGGgaGGa -3'
miRNA:   3'- gaGACCCa--CGGUUCUU-------------UGGUCCgaCC- -5'
29121 3' -54.5 NC_006146.1 + 144506 0.74 0.581155
Target:  5'- -cCUGGGgugGCCGGGGAgggguggggagugGCCAGGgaGGa -3'
miRNA:   3'- gaGACCCa--CGGUUCUU-------------UGGUCCgaCC- -5'
29121 3' -54.5 NC_006146.1 + 153739 0.74 0.581155
Target:  5'- -cCUGGGgugGCCGGGGAgggguggggagugGCCAGGgaGGa -3'
miRNA:   3'- gaGACCCa--CGGUUCUU-------------UGGUCCgaCC- -5'
29121 3' -54.5 NC_006146.1 + 148210 0.73 0.633512
Target:  5'- cCUCUGGGgccacccgggcUGCCGGGGucCCuccGGCUGGc -3'
miRNA:   3'- -GAGACCC-----------ACGGUUCUuuGGu--CCGACC- -5'
29121 3' -54.5 NC_006146.1 + 151288 0.73 0.633512
Target:  5'- cCUCUGGGgccacccgggcUGCCGGGGucCCuccGGCUGGc -3'
miRNA:   3'- -GAGACCC-----------ACGGUUCUuuGGu--CCGACC- -5'
29121 3' -54.5 NC_006146.1 + 145132 0.73 0.633512
Target:  5'- cCUCUGGGgccacccgggcUGCCGGGGucCCuccGGCUGGc -3'
miRNA:   3'- -GAGACCC-----------ACGGUUCUuuGGu--CCGACC- -5'
29121 3' -54.5 NC_006146.1 + 154366 0.73 0.633512
Target:  5'- cCUCUGGGgccacccgggcUGCCGGGGucCCuccGGCUGGc -3'
miRNA:   3'- -GAGACCC-----------ACGGUUCUuuGGu--CCGACC- -5'
29121 3' -54.5 NC_006146.1 + 157444 0.73 0.633512
Target:  5'- cCUCUGGGgccacccgggcUGCCGGGGucCCuccGGCUGGc -3'
miRNA:   3'- -GAGACCC-----------ACGGUUCUuuGGu--CCGACC- -5'
29121 3' -54.5 NC_006146.1 + 142054 0.73 0.633512
Target:  5'- cCUCUGGGgccacccgggcUGCCGGGGucCCuccGGCUGGc -3'
miRNA:   3'- -GAGACCC-----------ACGGUUCUuuGGu--CCGACC- -5'
29121 3' -54.5 NC_006146.1 + 123366 0.73 0.642778
Target:  5'- gCUCUGGcGcugGCCGGGGgccccgcAACCuGGCUGGa -3'
miRNA:   3'- -GAGACC-Ca--CGGUUCU-------UUGGuCCGACC- -5'
29121 3' -54.5 NC_006146.1 + 120541 0.73 0.674603
Target:  5'- ---cGGGacugcugGCCAAGAuccCCAGGCUGGc -3'
miRNA:   3'- gagaCCCa------CGGUUCUuu-GGUCCGACC- -5'
29121 3' -54.5 NC_006146.1 + 159222 0.72 0.684809
Target:  5'- aUCUGcGUGgauaCCGugGGggGCCAGGCUGGc -3'
miRNA:   3'- gAGACcCAC----GGU--UCuuUGGUCCGACC- -5'
29121 3' -54.5 NC_006146.1 + 33098 0.72 0.694972
Target:  5'- gCUCUGGGgcaGCCGGGugGCCGccGGCgGGu -3'
miRNA:   3'- -GAGACCCa--CGGUUCuuUGGU--CCGaCC- -5'
29121 3' -54.5 NC_006146.1 + 81659 0.72 0.694972
Target:  5'- gCUCggaGGGUGCCGGGGAAgC-GGCgGGa -3'
miRNA:   3'- -GAGa--CCCACGGUUCUUUgGuCCGaCC- -5'
29121 3' -54.5 NC_006146.1 + 27624 0.72 0.715128
Target:  5'- -aCUGGGUgGCCAGGGAAguuCCGGGCc-- -3'
miRNA:   3'- gaGACCCA-CGGUUCUUU---GGUCCGacc -5'
29121 3' -54.5 NC_006146.1 + 153402 0.72 0.719127
Target:  5'- ---aGGGUGCCAAGGGAguucccgggggcgggUguGGCUGGc -3'
miRNA:   3'- gagaCCCACGGUUCUUU---------------GguCCGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.