Results 21 - 40 of 128 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29121 | 3' | -54.5 | NC_006146.1 | + | 148498 | 0.67 | 0.925716 |
Target: 5'- ---cGGGcagGCCGGGcAGGCCGGGUcuUGGg -3' miRNA: 3'- gagaCCCa--CGGUUC-UUUGGUCCG--ACC- -5' |
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29121 | 3' | -54.5 | NC_006146.1 | + | 148210 | 0.73 | 0.633512 |
Target: 5'- cCUCUGGGgccacccgggcUGCCGGGGucCCuccGGCUGGc -3' miRNA: 3'- -GAGACCC-----------ACGGUUCUuuGGu--CCGACC- -5' |
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29121 | 3' | -54.5 | NC_006146.1 | + | 147584 | 0.74 | 0.581155 |
Target: 5'- -cCUGGGgugGCCGGGGAgggguggggagugGCCAGGgaGGa -3' miRNA: 3'- gaGACCCa--CGGUUCUU-------------UGGUCCgaCC- -5' |
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29121 | 3' | -54.5 | NC_006146.1 | + | 147448 | 0.68 | 0.882022 |
Target: 5'- gUUUGGGgGCgGcuGGGggUCGGGCUGGc -3' miRNA: 3'- gAGACCCaCGgU--UCUuuGGUCCGACC- -5' |
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29121 | 3' | -54.5 | NC_006146.1 | + | 145420 | 0.67 | 0.925716 |
Target: 5'- ---cGGGcagGCCGGGcAGGCCGGGUcuUGGg -3' miRNA: 3'- gagaCCCa--CGGUUC-UUUGGUCCG--ACC- -5' |
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29121 | 3' | -54.5 | NC_006146.1 | + | 145132 | 0.73 | 0.633512 |
Target: 5'- cCUCUGGGgccacccgggcUGCCGGGGucCCuccGGCUGGc -3' miRNA: 3'- -GAGACCC-----------ACGGUUCUuuGGu--CCGACC- -5' |
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29121 | 3' | -54.5 | NC_006146.1 | + | 144506 | 0.74 | 0.581155 |
Target: 5'- -cCUGGGgugGCCGGGGAgggguggggagugGCCAGGgaGGa -3' miRNA: 3'- gaGACCCa--CGGUUCUU-------------UGGUCCgaCC- -5' |
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29121 | 3' | -54.5 | NC_006146.1 | + | 144394 | 0.68 | 0.895683 |
Target: 5'- -cCUGGGUGUguGGGGucCCAGGCa-- -3' miRNA: 3'- gaGACCCACGguUCUUu-GGUCCGacc -5' |
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29121 | 3' | -54.5 | NC_006146.1 | + | 144370 | 0.68 | 0.882022 |
Target: 5'- gUUUGGGgGCgGcuGGGggUCGGGCUGGc -3' miRNA: 3'- gAGACCCaCGgU--UCUuuGGUCCGACC- -5' |
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29121 | 3' | -54.5 | NC_006146.1 | + | 143238 | 1.1 | 0.003817 |
Target: 5'- gCUCUGGGUGCCAAGAAACCAGGCUGGc -3' miRNA: 3'- -GAGACCCACGGUUCUUUGGUCCGACC- -5' |
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29121 | 3' | -54.5 | NC_006146.1 | + | 142342 | 0.67 | 0.925716 |
Target: 5'- ---cGGGcagGCCGGGcAGGCCGGGUcuUGGg -3' miRNA: 3'- gagaCCCa--CGGUUC-UUUGGUCCG--ACC- -5' |
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29121 | 3' | -54.5 | NC_006146.1 | + | 142054 | 0.73 | 0.633512 |
Target: 5'- cCUCUGGGgccacccgggcUGCCGGGGucCCuccGGCUGGc -3' miRNA: 3'- -GAGACCC-----------ACGGUUCUuuGGu--CCGACC- -5' |
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29121 | 3' | -54.5 | NC_006146.1 | + | 141428 | 0.74 | 0.581155 |
Target: 5'- -cCUGGGgugGCCGGGGAgggguggggagugGCCAGGgaGGa -3' miRNA: 3'- gaGACCCa--CGGUUCUU-------------UGGUCCgaCC- -5' |
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29121 | 3' | -54.5 | NC_006146.1 | + | 141292 | 0.68 | 0.882022 |
Target: 5'- gUUUGGGgGCgGcuGGGggUCGGGCUGGc -3' miRNA: 3'- gAGACCCaCGgU--UCUuuGGUCCGACC- -5' |
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29121 | 3' | -54.5 | NC_006146.1 | + | 137503 | 0.67 | 0.931 |
Target: 5'- gCUC-GGG-GCC-GGggGCCGGGUgccccUGGg -3' miRNA: 3'- -GAGaCCCaCGGuUCuuUGGUCCG-----ACC- -5' |
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29121 | 3' | -54.5 | NC_006146.1 | + | 137410 | 0.67 | 0.931 |
Target: 5'- gCUC-GGG-GCC-GGggGCCGGGUgccccUGGg -3' miRNA: 3'- -GAGaCCCaCGGuUCuuUGGUCCG-----ACC- -5' |
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29121 | 3' | -54.5 | NC_006146.1 | + | 137317 | 0.67 | 0.931 |
Target: 5'- gCUC-GGG-GCC-GGggGCCGGGUgccccUGGg -3' miRNA: 3'- -GAGaCCCaCGGuUCuuUGGUCCG-----ACC- -5' |
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29121 | 3' | -54.5 | NC_006146.1 | + | 137224 | 0.67 | 0.931 |
Target: 5'- gCUC-GGG-GCC-GGggGCCGGGUgccccUGGg -3' miRNA: 3'- -GAGaCCCaCGGuUCuuUGGUCCG-----ACC- -5' |
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29121 | 3' | -54.5 | NC_006146.1 | + | 137131 | 0.67 | 0.931 |
Target: 5'- gCUC-GGG-GCC-GGggGCCGGGUgccccUGGg -3' miRNA: 3'- -GAGaCCCaCGGuUCuuUGGUCCG-----ACC- -5' |
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29121 | 3' | -54.5 | NC_006146.1 | + | 137038 | 0.67 | 0.931 |
Target: 5'- gCUC-GGG-GCC-GGggGCCGGGUgccccUGGg -3' miRNA: 3'- -GAGaCCCaCGGuUCuuUGGUCCG-----ACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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