miRNA display CGI


Results 21 - 40 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29121 3' -54.5 NC_006146.1 + 148498 0.67 0.925716
Target:  5'- ---cGGGcagGCCGGGcAGGCCGGGUcuUGGg -3'
miRNA:   3'- gagaCCCa--CGGUUC-UUUGGUCCG--ACC- -5'
29121 3' -54.5 NC_006146.1 + 148210 0.73 0.633512
Target:  5'- cCUCUGGGgccacccgggcUGCCGGGGucCCuccGGCUGGc -3'
miRNA:   3'- -GAGACCC-----------ACGGUUCUuuGGu--CCGACC- -5'
29121 3' -54.5 NC_006146.1 + 147584 0.74 0.581155
Target:  5'- -cCUGGGgugGCCGGGGAgggguggggagugGCCAGGgaGGa -3'
miRNA:   3'- gaGACCCa--CGGUUCUU-------------UGGUCCgaCC- -5'
29121 3' -54.5 NC_006146.1 + 147448 0.68 0.882022
Target:  5'- gUUUGGGgGCgGcuGGGggUCGGGCUGGc -3'
miRNA:   3'- gAGACCCaCGgU--UCUuuGGUCCGACC- -5'
29121 3' -54.5 NC_006146.1 + 145420 0.67 0.925716
Target:  5'- ---cGGGcagGCCGGGcAGGCCGGGUcuUGGg -3'
miRNA:   3'- gagaCCCa--CGGUUC-UUUGGUCCG--ACC- -5'
29121 3' -54.5 NC_006146.1 + 145132 0.73 0.633512
Target:  5'- cCUCUGGGgccacccgggcUGCCGGGGucCCuccGGCUGGc -3'
miRNA:   3'- -GAGACCC-----------ACGGUUCUuuGGu--CCGACC- -5'
29121 3' -54.5 NC_006146.1 + 144506 0.74 0.581155
Target:  5'- -cCUGGGgugGCCGGGGAgggguggggagugGCCAGGgaGGa -3'
miRNA:   3'- gaGACCCa--CGGUUCUU-------------UGGUCCgaCC- -5'
29121 3' -54.5 NC_006146.1 + 144394 0.68 0.895683
Target:  5'- -cCUGGGUGUguGGGGucCCAGGCa-- -3'
miRNA:   3'- gaGACCCACGguUCUUu-GGUCCGacc -5'
29121 3' -54.5 NC_006146.1 + 144370 0.68 0.882022
Target:  5'- gUUUGGGgGCgGcuGGGggUCGGGCUGGc -3'
miRNA:   3'- gAGACCCaCGgU--UCUuuGGUCCGACC- -5'
29121 3' -54.5 NC_006146.1 + 143238 1.1 0.003817
Target:  5'- gCUCUGGGUGCCAAGAAACCAGGCUGGc -3'
miRNA:   3'- -GAGACCCACGGUUCUUUGGUCCGACC- -5'
29121 3' -54.5 NC_006146.1 + 142342 0.67 0.925716
Target:  5'- ---cGGGcagGCCGGGcAGGCCGGGUcuUGGg -3'
miRNA:   3'- gagaCCCa--CGGUUC-UUUGGUCCG--ACC- -5'
29121 3' -54.5 NC_006146.1 + 142054 0.73 0.633512
Target:  5'- cCUCUGGGgccacccgggcUGCCGGGGucCCuccGGCUGGc -3'
miRNA:   3'- -GAGACCC-----------ACGGUUCUuuGGu--CCGACC- -5'
29121 3' -54.5 NC_006146.1 + 141428 0.74 0.581155
Target:  5'- -cCUGGGgugGCCGGGGAgggguggggagugGCCAGGgaGGa -3'
miRNA:   3'- gaGACCCa--CGGUUCUU-------------UGGUCCgaCC- -5'
29121 3' -54.5 NC_006146.1 + 141292 0.68 0.882022
Target:  5'- gUUUGGGgGCgGcuGGGggUCGGGCUGGc -3'
miRNA:   3'- gAGACCCaCGgU--UCUuuGGUCCGACC- -5'
29121 3' -54.5 NC_006146.1 + 137503 0.67 0.931
Target:  5'- gCUC-GGG-GCC-GGggGCCGGGUgccccUGGg -3'
miRNA:   3'- -GAGaCCCaCGGuUCuuUGGUCCG-----ACC- -5'
29121 3' -54.5 NC_006146.1 + 137410 0.67 0.931
Target:  5'- gCUC-GGG-GCC-GGggGCCGGGUgccccUGGg -3'
miRNA:   3'- -GAGaCCCaCGGuUCuuUGGUCCG-----ACC- -5'
29121 3' -54.5 NC_006146.1 + 137317 0.67 0.931
Target:  5'- gCUC-GGG-GCC-GGggGCCGGGUgccccUGGg -3'
miRNA:   3'- -GAGaCCCaCGGuUCuuUGGUCCG-----ACC- -5'
29121 3' -54.5 NC_006146.1 + 137224 0.67 0.931
Target:  5'- gCUC-GGG-GCC-GGggGCCGGGUgccccUGGg -3'
miRNA:   3'- -GAGaCCCaCGGuUCuuUGGUCCG-----ACC- -5'
29121 3' -54.5 NC_006146.1 + 137131 0.67 0.931
Target:  5'- gCUC-GGG-GCC-GGggGCCGGGUgccccUGGg -3'
miRNA:   3'- -GAGaCCCaCGGuUCuuUGGUCCG-----ACC- -5'
29121 3' -54.5 NC_006146.1 + 137038 0.67 0.931
Target:  5'- gCUC-GGG-GCC-GGggGCCGGGUgccccUGGg -3'
miRNA:   3'- -GAGaCCCaCGGuUCuuUGGUCCG-----ACC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.