miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29121 3' -54.5 NC_006146.1 + 162216 0.71 0.734998
Target:  5'- ---aGGcGUGUCAcagaGGggGCUAGGCUGGu -3'
miRNA:   3'- gagaCC-CACGGU----UCuuUGGUCCGACC- -5'
29121 3' -54.5 NC_006146.1 + 162033 0.67 0.920189
Target:  5'- -aCUGGGaGCCuGGggGCgggggCAGGCUGu -3'
miRNA:   3'- gaGACCCaCGGuUCuuUG-----GUCCGACc -5'
29121 3' -54.5 NC_006146.1 + 160941 0.7 0.818858
Target:  5'- ---cGGGUGCCAgauAGAGcaucACCAGGCa-- -3'
miRNA:   3'- gagaCCCACGGU---UCUU----UGGUCCGacc -5'
29121 3' -54.5 NC_006146.1 + 159222 0.72 0.684809
Target:  5'- aUCUGcGUGgauaCCGugGGggGCCAGGCUGGc -3'
miRNA:   3'- gAGACcCAC----GGU--UCuuUGGUCCGACC- -5'
29121 3' -54.5 NC_006146.1 + 157731 0.67 0.925716
Target:  5'- ---cGGGcagGCCGGGcAGGCCGGGUcuUGGg -3'
miRNA:   3'- gagaCCCa--CGGUUC-UUUGGUCCG--ACC- -5'
29121 3' -54.5 NC_006146.1 + 157639 0.68 0.902165
Target:  5'- -cCUGGGUcuugggcaccaGCCccuGGACCAGGCUGa -3'
miRNA:   3'- gaGACCCA-----------CGGuucUUUGGUCCGACc -5'
29121 3' -54.5 NC_006146.1 + 157444 0.73 0.633512
Target:  5'- cCUCUGGGgccacccgggcUGCCGGGGucCCuccGGCUGGc -3'
miRNA:   3'- -GAGACCC-----------ACGGUUCUuuGGu--CCGACC- -5'
29121 3' -54.5 NC_006146.1 + 156817 0.74 0.581155
Target:  5'- -cCUGGGgugGCCGGGGAgggguggggagugGCCAGGgaGGa -3'
miRNA:   3'- gaGACCCa--CGGUUCUU-------------UGGUCCgaCC- -5'
29121 3' -54.5 NC_006146.1 + 156682 0.68 0.874853
Target:  5'- gUUUGGGgcgGCU-GGGggUCGGGCUGGc -3'
miRNA:   3'- gAGACCCa--CGGuUCUuuGGUCCGACC- -5'
29121 3' -54.5 NC_006146.1 + 155568 0.68 0.902165
Target:  5'- gCUCgcgcGGGgcgcccGCCAGGGGcacACCGgGGCUGGc -3'
miRNA:   3'- -GAGa---CCCa-----CGGUUCUU---UGGU-CCGACC- -5'
29121 3' -54.5 NC_006146.1 + 154654 0.67 0.925716
Target:  5'- ---cGGGcagGCCGGGcAGGCCGGGUcuUGGg -3'
miRNA:   3'- gagaCCCa--CGGUUC-UUUGGUCCG--ACC- -5'
29121 3' -54.5 NC_006146.1 + 154366 0.73 0.633512
Target:  5'- cCUCUGGGgccacccgggcUGCCGGGGucCCuccGGCUGGc -3'
miRNA:   3'- -GAGACCC-----------ACGGUUCUuuGGu--CCGACC- -5'
29121 3' -54.5 NC_006146.1 + 153739 0.74 0.581155
Target:  5'- -cCUGGGgugGCCGGGGAgggguggggagugGCCAGGgaGGa -3'
miRNA:   3'- gaGACCCa--CGGUUCUU-------------UGGUCCgaCC- -5'
29121 3' -54.5 NC_006146.1 + 153604 0.68 0.882022
Target:  5'- gUUUGGGgGCgGcuGGGggUCGGGCUGGc -3'
miRNA:   3'- gAGACCCaCGgU--UCUuuGGUCCGACC- -5'
29121 3' -54.5 NC_006146.1 + 153402 0.72 0.719127
Target:  5'- ---aGGGUGCCAAGGGAguucccgggggcgggUguGGCUGGc -3'
miRNA:   3'- gagaCCCACGGUUCUUU---------------GguCCGACC- -5'
29121 3' -54.5 NC_006146.1 + 151576 0.67 0.925716
Target:  5'- ---cGGGcagGCCGGGcAGGCCGGGUcuUGGg -3'
miRNA:   3'- gagaCCCa--CGGUUC-UUUGGUCCG--ACC- -5'
29121 3' -54.5 NC_006146.1 + 151288 0.73 0.633512
Target:  5'- cCUCUGGGgccacccgggcUGCCGGGGucCCuccGGCUGGc -3'
miRNA:   3'- -GAGACCC-----------ACGGUUCUuuGGu--CCGACC- -5'
29121 3' -54.5 NC_006146.1 + 150662 0.68 0.895021
Target:  5'- -cCUGGGgugGCCGGGGAgggguggggagugGCCAGGg-GGa -3'
miRNA:   3'- gaGACCCa--CGGUUCUU-------------UGGUCCgaCC- -5'
29121 3' -54.5 NC_006146.1 + 150541 0.67 0.937993
Target:  5'- uUCUGGGccgcgGCCAGGAGGCaGGagaacacgcggaucuGCUGGc -3'
miRNA:   3'- gAGACCCa----CGGUUCUUUGgUC---------------CGACC- -5'
29121 3' -54.5 NC_006146.1 + 150526 0.68 0.882022
Target:  5'- gUUUGGGgGCgGcuGGGggUCGGGCUGGc -3'
miRNA:   3'- gAGACCCaCGgU--UCUuuGGUCCGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.