miRNA display CGI


Results 1 - 20 of 159 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29121 5' -60.9 NC_006146.1 + 143272 1.08 0.001201
Target:  5'- aCGCUGGCCCGGAACUUCCCUGGCCACc -3'
miRNA:   3'- -GCGACCGGGCCUUGAAGGGACCGGUG- -5'
29121 5' -60.9 NC_006146.1 + 127573 0.79 0.137508
Target:  5'- uGCUGGCCCuGGGCggCCgaGGCCGCg -3'
miRNA:   3'- gCGACCGGGcCUUGaaGGgaCCGGUG- -5'
29121 5' -60.9 NC_006146.1 + 115369 0.77 0.171742
Target:  5'- gGCgUGGCggCGGAGCUggaggCCCUGGCCGCu -3'
miRNA:   3'- gCG-ACCGg-GCCUUGAa----GGGACCGGUG- -5'
29121 5' -60.9 NC_006146.1 + 165807 0.77 0.18475
Target:  5'- gGCcGGCUaggGGGGCgUCCCUGGCCGCg -3'
miRNA:   3'- gCGaCCGGg--CCUUGaAGGGACCGGUG- -5'
29121 5' -60.9 NC_006146.1 + 155860 0.76 0.203441
Target:  5'- uCGCaGGCCCGGcggg-CCCUGGCCAg -3'
miRNA:   3'- -GCGaCCGGGCCuugaaGGGACCGGUg -5'
29121 5' -60.9 NC_006146.1 + 146529 0.75 0.245758
Target:  5'- gCGCcGcGCCCuGGAGCUggCCCUGcGCCACu -3'
miRNA:   3'- -GCGaC-CGGG-CCUUGAa-GGGAC-CGGUG- -5'
29121 5' -60.9 NC_006146.1 + 42480 0.75 0.251534
Target:  5'- uGC-GGCCCGGAucaccCUcCCCUGGCCGu -3'
miRNA:   3'- gCGaCCGGGCCUu----GAaGGGACCGGUg -5'
29121 5' -60.9 NC_006146.1 + 123372 0.74 0.297783
Target:  5'- gCGCUGGCCgGGGGCc-CCgcaaccuggcuggaaCUGGCCGCg -3'
miRNA:   3'- -GCGACCGGgCCUUGaaGG---------------GACCGGUG- -5'
29121 5' -60.9 NC_006146.1 + 58677 0.73 0.322567
Target:  5'- aGCUGuuCCGGGACgagCCCUGGUCGg -3'
miRNA:   3'- gCGACcgGGCCUUGaa-GGGACCGGUg -5'
29121 5' -60.9 NC_006146.1 + 148152 0.73 0.329719
Target:  5'- uGCUggucagGGCCCGGGuCUUCUCUacGGCCAUg -3'
miRNA:   3'- gCGA------CCGGGCCUuGAAGGGA--CCGGUG- -5'
29121 5' -60.9 NC_006146.1 + 150895 0.73 0.336987
Target:  5'- uGUUGGCCCGGAGgaagccCUUCCC-GGCguCg -3'
miRNA:   3'- gCGACCGGGCCUU------GAAGGGaCCGguG- -5'
29121 5' -60.9 NC_006146.1 + 33957 0.73 0.344371
Target:  5'- cCGCUGGUCCGGGuggGCguggUCCgCUGGguCCGCu -3'
miRNA:   3'- -GCGACCGGGCCU---UGa---AGG-GACC--GGUG- -5'
29121 5' -60.9 NC_006146.1 + 61923 0.72 0.359486
Target:  5'- gGCgGGCCaucaGGGGCUccagggCCCUGGuCCACg -3'
miRNA:   3'- gCGaCCGGg---CCUUGAa-----GGGACC-GGUG- -5'
29121 5' -60.9 NC_006146.1 + 42699 0.72 0.367216
Target:  5'- gCGuCUGGCCCGGcgccgcGGCgcccCCCUgGGCCGCc -3'
miRNA:   3'- -GC-GACCGGGCC------UUGaa--GGGA-CCGGUG- -5'
29121 5' -60.9 NC_006146.1 + 114556 0.72 0.367216
Target:  5'- gGuCUGGCCCGGGACaaUCUUGGUCAg -3'
miRNA:   3'- gC-GACCGGGCCUUGaaGGGACCGGUg -5'
29121 5' -60.9 NC_006146.1 + 129650 0.72 0.374269
Target:  5'- uGCUccGCCCGGGAauggcgagagcgcUUUCgCCUGGCCACg -3'
miRNA:   3'- gCGAc-CGGGCCUU-------------GAAG-GGACCGGUG- -5'
29121 5' -60.9 NC_006146.1 + 33031 0.72 0.383014
Target:  5'- uGCcGGCCCGGGGCggggCCCgGGaCACg -3'
miRNA:   3'- gCGaCCGGGCCUUGaa--GGGaCCgGUG- -5'
29121 5' -60.9 NC_006146.1 + 39783 0.72 0.391081
Target:  5'- gGCUugGGCCCGGAGC-UCCC-GGCUu- -3'
miRNA:   3'- gCGA--CCGGGCCUUGaAGGGaCCGGug -5'
29121 5' -60.9 NC_006146.1 + 17128 0.71 0.399258
Target:  5'- cCGCaGGCCaGGccCUccguccUCCCUGGCCACu -3'
miRNA:   3'- -GCGaCCGGgCCuuGA------AGGGACCGGUG- -5'
29121 5' -60.9 NC_006146.1 + 14050 0.71 0.399258
Target:  5'- cCGCaGGCCaGGccCUccguccUCCCUGGCCACu -3'
miRNA:   3'- -GCGaCCGGgCCuuGA------AGGGACCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.