Results 1 - 20 of 159 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29121 | 5' | -60.9 | NC_006146.1 | + | 143272 | 1.08 | 0.001201 |
Target: 5'- aCGCUGGCCCGGAACUUCCCUGGCCACc -3' miRNA: 3'- -GCGACCGGGCCUUGAAGGGACCGGUG- -5' |
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29121 | 5' | -60.9 | NC_006146.1 | + | 127573 | 0.79 | 0.137508 |
Target: 5'- uGCUGGCCCuGGGCggCCgaGGCCGCg -3' miRNA: 3'- gCGACCGGGcCUUGaaGGgaCCGGUG- -5' |
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29121 | 5' | -60.9 | NC_006146.1 | + | 115369 | 0.77 | 0.171742 |
Target: 5'- gGCgUGGCggCGGAGCUggaggCCCUGGCCGCu -3' miRNA: 3'- gCG-ACCGg-GCCUUGAa----GGGACCGGUG- -5' |
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29121 | 5' | -60.9 | NC_006146.1 | + | 165807 | 0.77 | 0.18475 |
Target: 5'- gGCcGGCUaggGGGGCgUCCCUGGCCGCg -3' miRNA: 3'- gCGaCCGGg--CCUUGaAGGGACCGGUG- -5' |
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29121 | 5' | -60.9 | NC_006146.1 | + | 155860 | 0.76 | 0.203441 |
Target: 5'- uCGCaGGCCCGGcggg-CCCUGGCCAg -3' miRNA: 3'- -GCGaCCGGGCCuugaaGGGACCGGUg -5' |
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29121 | 5' | -60.9 | NC_006146.1 | + | 146529 | 0.75 | 0.245758 |
Target: 5'- gCGCcGcGCCCuGGAGCUggCCCUGcGCCACu -3' miRNA: 3'- -GCGaC-CGGG-CCUUGAa-GGGAC-CGGUG- -5' |
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29121 | 5' | -60.9 | NC_006146.1 | + | 42480 | 0.75 | 0.251534 |
Target: 5'- uGC-GGCCCGGAucaccCUcCCCUGGCCGu -3' miRNA: 3'- gCGaCCGGGCCUu----GAaGGGACCGGUg -5' |
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29121 | 5' | -60.9 | NC_006146.1 | + | 123372 | 0.74 | 0.297783 |
Target: 5'- gCGCUGGCCgGGGGCc-CCgcaaccuggcuggaaCUGGCCGCg -3' miRNA: 3'- -GCGACCGGgCCUUGaaGG---------------GACCGGUG- -5' |
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29121 | 5' | -60.9 | NC_006146.1 | + | 58677 | 0.73 | 0.322567 |
Target: 5'- aGCUGuuCCGGGACgagCCCUGGUCGg -3' miRNA: 3'- gCGACcgGGCCUUGaa-GGGACCGGUg -5' |
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29121 | 5' | -60.9 | NC_006146.1 | + | 148152 | 0.73 | 0.329719 |
Target: 5'- uGCUggucagGGCCCGGGuCUUCUCUacGGCCAUg -3' miRNA: 3'- gCGA------CCGGGCCUuGAAGGGA--CCGGUG- -5' |
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29121 | 5' | -60.9 | NC_006146.1 | + | 150895 | 0.73 | 0.336987 |
Target: 5'- uGUUGGCCCGGAGgaagccCUUCCC-GGCguCg -3' miRNA: 3'- gCGACCGGGCCUU------GAAGGGaCCGguG- -5' |
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29121 | 5' | -60.9 | NC_006146.1 | + | 33957 | 0.73 | 0.344371 |
Target: 5'- cCGCUGGUCCGGGuggGCguggUCCgCUGGguCCGCu -3' miRNA: 3'- -GCGACCGGGCCU---UGa---AGG-GACC--GGUG- -5' |
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29121 | 5' | -60.9 | NC_006146.1 | + | 61923 | 0.72 | 0.359486 |
Target: 5'- gGCgGGCCaucaGGGGCUccagggCCCUGGuCCACg -3' miRNA: 3'- gCGaCCGGg---CCUUGAa-----GGGACC-GGUG- -5' |
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29121 | 5' | -60.9 | NC_006146.1 | + | 42699 | 0.72 | 0.367216 |
Target: 5'- gCGuCUGGCCCGGcgccgcGGCgcccCCCUgGGCCGCc -3' miRNA: 3'- -GC-GACCGGGCC------UUGaa--GGGA-CCGGUG- -5' |
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29121 | 5' | -60.9 | NC_006146.1 | + | 114556 | 0.72 | 0.367216 |
Target: 5'- gGuCUGGCCCGGGACaaUCUUGGUCAg -3' miRNA: 3'- gC-GACCGGGCCUUGaaGGGACCGGUg -5' |
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29121 | 5' | -60.9 | NC_006146.1 | + | 129650 | 0.72 | 0.374269 |
Target: 5'- uGCUccGCCCGGGAauggcgagagcgcUUUCgCCUGGCCACg -3' miRNA: 3'- gCGAc-CGGGCCUU-------------GAAG-GGACCGGUG- -5' |
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29121 | 5' | -60.9 | NC_006146.1 | + | 33031 | 0.72 | 0.383014 |
Target: 5'- uGCcGGCCCGGGGCggggCCCgGGaCACg -3' miRNA: 3'- gCGaCCGGGCCUUGaa--GGGaCCgGUG- -5' |
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29121 | 5' | -60.9 | NC_006146.1 | + | 39783 | 0.72 | 0.391081 |
Target: 5'- gGCUugGGCCCGGAGC-UCCC-GGCUu- -3' miRNA: 3'- gCGA--CCGGGCCUUGaAGGGaCCGGug -5' |
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29121 | 5' | -60.9 | NC_006146.1 | + | 14050 | 0.71 | 0.399258 |
Target: 5'- cCGCaGGCCaGGccCUccguccUCCCUGGCCACu -3' miRNA: 3'- -GCGaCCGGgCCuuGA------AGGGACCGGUG- -5' |
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29121 | 5' | -60.9 | NC_006146.1 | + | 17128 | 0.71 | 0.399258 |
Target: 5'- cCGCaGGCCaGGccCUccguccUCCCUGGCCACu -3' miRNA: 3'- -GCGaCCGGgCCuuGA------AGGGACCGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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