miRNA display CGI


Results 1 - 20 of 159 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29121 5' -60.9 NC_006146.1 + 218 0.71 0.415936
Target:  5'- cCGCgacGGucCCCGGGGCgcCCCUGGCCu- -3'
miRNA:   3'- -GCGa--CC--GGGCCUUGaaGGGACCGGug -5'
29121 5' -60.9 NC_006146.1 + 845 0.67 0.667949
Target:  5'- aCGCgcGGCCCcGGGCccUCCCcgacauccagggacUGGCCGCg -3'
miRNA:   3'- -GCGa-CCGGGcCUUGa-AGGG--------------ACCGGUG- -5'
29121 5' -60.9 NC_006146.1 + 1777 0.67 0.667949
Target:  5'- aCGCgcGGCCCcGGGCccUCCCcgacauccagggacUGGCCGCg -3'
miRNA:   3'- -GCGa-CCGGGcCUUGa-AGGG--------------ACCGGUG- -5'
29121 5' -60.9 NC_006146.1 + 2709 0.67 0.667949
Target:  5'- aCGCgcGGCCCcGGGCccUCCCcgacauccagggacUGGCCGCg -3'
miRNA:   3'- -GCGa-CCGGGcCUUGa-AGGG--------------ACCGGUG- -5'
29121 5' -60.9 NC_006146.1 + 3641 0.67 0.667949
Target:  5'- aCGCgcGGCCCcGGGCccUCCCcgacauccagggacUGGCCGCg -3'
miRNA:   3'- -GCGa-CCGGGcCUUGa-AGGG--------------ACCGGUG- -5'
29121 5' -60.9 NC_006146.1 + 5496 0.67 0.661053
Target:  5'- -cCUGGCCUGGuuuACggUCCUGGUCGa -3'
miRNA:   3'- gcGACCGGGCCu--UGaaGGGACCGGUg -5'
29121 5' -60.9 NC_006146.1 + 10672 0.67 0.641299
Target:  5'- gGgaGGCCCGGGGCgauaCCCgcgGGCa-- -3'
miRNA:   3'- gCgaCCGGGCCUUGaa--GGGa--CCGgug -5'
29121 5' -60.9 NC_006146.1 + 13110 0.66 0.70992
Target:  5'- -cCUGGCCCuguuuguggacgGGGGC-UCCCgGGcCCACg -3'
miRNA:   3'- gcGACCGGG------------CCUUGaAGGGaCC-GGUG- -5'
29121 5' -60.9 NC_006146.1 + 14050 0.71 0.399258
Target:  5'- cCGCaGGCCaGGccCUccguccUCCCUGGCCACu -3'
miRNA:   3'- -GCGaCCGGgCCuuGA------AGGGACCGGUG- -5'
29121 5' -60.9 NC_006146.1 + 14154 0.71 0.441734
Target:  5'- gCGCUGGCCgUGGAGCUgagCgUCUGcGCCAg -3'
miRNA:   3'- -GCGACCGG-GCCUUGAa--G-GGAC-CGGUg -5'
29121 5' -60.9 NC_006146.1 + 14359 0.67 0.670901
Target:  5'- uGCUGGuggggucggguCCCGGGaucucgccucccGCUcCCCUccgGGCCGCg -3'
miRNA:   3'- gCGACC-----------GGGCCU------------UGAaGGGA---CCGGUG- -5'
29121 5' -60.9 NC_006146.1 + 15429 0.69 0.514617
Target:  5'- gGCUGGCCCGGcuGCagUCcugCCUGGCgCAg -3'
miRNA:   3'- gCGACCGGGCCu-UGa-AG---GGACCG-GUg -5'
29121 5' -60.9 NC_006146.1 + 17128 0.71 0.399258
Target:  5'- cCGCaGGCCaGGccCUccguccUCCCUGGCCACu -3'
miRNA:   3'- -GCGaCCGGgCCuuGA------AGGGACCGGUG- -5'
29121 5' -60.9 NC_006146.1 + 20118 0.66 0.719541
Target:  5'- aCGgUGGCCCGGcACcUgCUgggGGCCAa -3'
miRNA:   3'- -GCgACCGGGCCuUGaAgGGa--CCGGUg -5'
29121 5' -60.9 NC_006146.1 + 20206 0.71 0.399258
Target:  5'- cCGCaGGCCaGGccCUccguccUCCCUGGCCACu -3'
miRNA:   3'- -GCGaCCGGgCCuuGA------AGGGACCGGUG- -5'
29121 5' -60.9 NC_006146.1 + 23284 0.71 0.399258
Target:  5'- cCGCaGGCCaGGccCUccguccUCCCUGGCCACu -3'
miRNA:   3'- -GCGaCCGGgCCuuGA------AGGGACCGGUG- -5'
29121 5' -60.9 NC_006146.1 + 23802 0.66 0.677778
Target:  5'- cCGCUGaGCCCc-AGCUcgcccacuucucucUCCCUGGCCu- -3'
miRNA:   3'- -GCGAC-CGGGccUUGA--------------AGGGACCGGug -5'
29121 5' -60.9 NC_006146.1 + 26362 0.71 0.399258
Target:  5'- cCGCaGGCCaGGccCUccguccUCCCUGGCCACu -3'
miRNA:   3'- -GCGaCCGGgCCuuGA------AGGGACCGGUG- -5'
29121 5' -60.9 NC_006146.1 + 27897 0.66 0.729092
Target:  5'- aGCggaggGGaCCgGGAGCUgcUCCCacGGCCAa -3'
miRNA:   3'- gCGa----CC-GGgCCUUGA--AGGGa-CCGGUg -5'
29121 5' -60.9 NC_006146.1 + 29154 0.66 0.729092
Target:  5'- aCGCUGagccuuCCCGGuGCaccgUCCCUGGaCACu -3'
miRNA:   3'- -GCGACc-----GGGCCuUGa---AGGGACCgGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.