miRNA display CGI


Results 21 - 40 of 159 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29121 5' -60.9 NC_006146.1 + 167639 0.66 0.719541
Target:  5'- cCGCggGGCCCGGcGCgUgCCgggGGCC-Cg -3'
miRNA:   3'- -GCGa-CCGGGCCuUGaAgGGa--CCGGuG- -5'
29121 5' -60.9 NC_006146.1 + 97525 0.66 0.719541
Target:  5'- aCGUgaaGGCCCGGAugauCUcgUCCCaguucugcGGCUACg -3'
miRNA:   3'- -GCGa--CCGGGCCUu---GA--AGGGa-------CCGGUG- -5'
29121 5' -60.9 NC_006146.1 + 109471 0.66 0.719541
Target:  5'- aGCUGaucaGCCCGGccgugCCCgcguUGGCCACc -3'
miRNA:   3'- gCGAC----CGGGCCuugaaGGG----ACCGGUG- -5'
29121 5' -60.9 NC_006146.1 + 124143 0.66 0.719541
Target:  5'- cCGCccggGGUCgGGAgGCgaggaCCCUGGCCAg -3'
miRNA:   3'- -GCGa---CCGGgCCU-UGaa---GGGACCGGUg -5'
29121 5' -60.9 NC_006146.1 + 55794 0.66 0.712813
Target:  5'- aCGCUGGCCagcgacuCGGGGCgguggaagaggccgUCCC-GGCCu- -3'
miRNA:   3'- -GCGACCGG-------GCCUUGa-------------AGGGaCCGGug -5'
29121 5' -60.9 NC_006146.1 + 13110 0.66 0.70992
Target:  5'- -cCUGGCCCuguuuguggacgGGGGC-UCCCgGGcCCACg -3'
miRNA:   3'- gcGACCGGG------------CCUUGaAGGGaCC-GGUG- -5'
29121 5' -60.9 NC_006146.1 + 73539 0.66 0.708954
Target:  5'- gGCcaGGCuCCGGAGCUcCCCgggcgggugguugUGGCCGg -3'
miRNA:   3'- gCGa-CCG-GGCCUUGAaGGG-------------ACCGGUg -5'
29121 5' -60.9 NC_006146.1 + 77478 0.66 0.700237
Target:  5'- aGCcaaGGCCCaGGGGCUgUCCCUGaacaaggucGCCAUc -3'
miRNA:   3'- gCGa--CCGGG-CCUUGA-AGGGAC---------CGGUG- -5'
29121 5' -60.9 NC_006146.1 + 76865 0.66 0.700237
Target:  5'- aCGCggcgGcGCUCGGGGCcgugCCCcugccgGGCCGCa -3'
miRNA:   3'- -GCGa---C-CGGGCCUUGaa--GGGa-----CCGGUG- -5'
29121 5' -60.9 NC_006146.1 + 47722 0.66 0.700237
Target:  5'- aGCaGcGCCCGGAGCUcgucgUCCggGGCCu- -3'
miRNA:   3'- gCGaC-CGGGCCUUGA-----AGGgaCCGGug -5'
29121 5' -60.9 NC_006146.1 + 47307 0.66 0.690501
Target:  5'- gGCUGGCCaaGAGCUUCUUUGaGCUu- -3'
miRNA:   3'- gCGACCGGgcCUUGAAGGGAC-CGGug -5'
29121 5' -60.9 NC_006146.1 + 45527 0.66 0.687571
Target:  5'- gGUgggGGCCUGGGccuccuugggcuugGCcgCCCUGGCCu- -3'
miRNA:   3'- gCGa--CCGGGCCU--------------UGaaGGGACCGGug -5'
29121 5' -60.9 NC_006146.1 + 23802 0.66 0.677778
Target:  5'- cCGCUGaGCCCc-AGCUcgcccacuucucucUCCCUGGCCu- -3'
miRNA:   3'- -GCGAC-CGGGccUUGA--------------AGGGACCGGug -5'
29121 5' -60.9 NC_006146.1 + 120481 0.67 0.670901
Target:  5'- aGCUugcGGCCUGccuGCcgUCCCUGGCgGCc -3'
miRNA:   3'- gCGA---CCGGGCcu-UGa-AGGGACCGgUG- -5'
29121 5' -60.9 NC_006146.1 + 14359 0.67 0.670901
Target:  5'- uGCUGGuggggucggguCCCGGGaucucgccucccGCUcCCCUccgGGCCGCg -3'
miRNA:   3'- gCGACC-----------GGGCCU------------UGAaGGGA---CCGGUG- -5'
29121 5' -60.9 NC_006146.1 + 158177 0.67 0.670901
Target:  5'- gGCUGGUCuCGcuuGCUggCCCcaaUGGCCGCg -3'
miRNA:   3'- gCGACCGG-GCcu-UGAa-GGG---ACCGGUG- -5'
29121 5' -60.9 NC_006146.1 + 155098 0.67 0.670901
Target:  5'- gGCUGGUCuCGcuuGCUggCCCcaaUGGCCGCg -3'
miRNA:   3'- gCGACCGG-GCcu-UGAa-GGG---ACCGGUG- -5'
29121 5' -60.9 NC_006146.1 + 152020 0.67 0.670901
Target:  5'- gGCUGGUCuCGcuuGCUggCCCcaaUGGCCGCg -3'
miRNA:   3'- gCGACCGG-GCcu-UGAa-GGG---ACCGGUG- -5'
29121 5' -60.9 NC_006146.1 + 122560 0.67 0.670901
Target:  5'- cCGCUGGCCagacuGGACg--CCUGGCCcACc -3'
miRNA:   3'- -GCGACCGGgc---CUUGaagGGACCGG-UG- -5'
29121 5' -60.9 NC_006146.1 + 101192 0.67 0.670901
Target:  5'- aCGCUGcGCCCcucGGAGCUgaagauccaCCUGGCaGCc -3'
miRNA:   3'- -GCGAC-CGGG---CCUUGAag-------GGACCGgUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.