miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29123 3' -55.1 NC_006146.1 + 15170 0.66 0.964944
Target:  5'- gCCGuGgaagCGCUgaagGCCGACUGCGcGGCc -3'
miRNA:   3'- -GGC-Ca---GCGAaug-CGGCUGGCGCaUUG- -5'
29123 3' -55.1 NC_006146.1 + 40380 0.66 0.964944
Target:  5'- cCUGGUCGC---CGCCcGgCGCGUAGu -3'
miRNA:   3'- -GGCCAGCGaauGCGGcUgGCGCAUUg -5'
29123 3' -55.1 NC_006146.1 + 170146 0.66 0.954349
Target:  5'- cUCGGcugcacgCGCggcgGCGCCGGCCGgG-GGCu -3'
miRNA:   3'- -GGCCa------GCGaa--UGCGGCUGGCgCaUUG- -5'
29123 3' -55.1 NC_006146.1 + 169215 0.66 0.954349
Target:  5'- cUCGGcugcacgCGCggcgGCGCCGGCCGgG-GGCu -3'
miRNA:   3'- -GGCCa------GCGaa--UGCGGCUGGCgCaUUG- -5'
29123 3' -55.1 NC_006146.1 + 168283 0.66 0.954349
Target:  5'- cUCGGcugcacgCGCggcgGCGCCGGCCGgG-GGCu -3'
miRNA:   3'- -GGCCa------GCGaa--UGCGGCUGGCgCaUUG- -5'
29123 3' -55.1 NC_006146.1 + 167351 0.66 0.954349
Target:  5'- cUCGGcugcacgCGCggcgGCGCCGGCCGgG-GGCu -3'
miRNA:   3'- -GGCCa------GCGaa--UGCGGCUGGCgCaUUG- -5'
29123 3' -55.1 NC_006146.1 + 76403 0.66 0.954349
Target:  5'- aCCGGgg----GCGCCGACggcgGCGUGACc -3'
miRNA:   3'- -GGCCagcgaaUGCGGCUGg---CGCAUUG- -5'
29123 3' -55.1 NC_006146.1 + 159337 0.66 0.947897
Target:  5'- gCCGG-CGUcucgUGCGCCG-CCuccagcauggcggggGCGUAGCu -3'
miRNA:   3'- -GGCCaGCGa---AUGCGGCuGG---------------CGCAUUG- -5'
29123 3' -55.1 NC_006146.1 + 43749 0.66 0.946194
Target:  5'- gUGGUCGCgcaugACGCCGuccagcuccaCGCGgaGCa -3'
miRNA:   3'- gGCCAGCGaa---UGCGGCug--------GCGCauUG- -5'
29123 3' -55.1 NC_006146.1 + 117880 0.66 0.946194
Target:  5'- gCGGcCGCg---GCCaGCCGCGUGAg -3'
miRNA:   3'- gGCCaGCGaaugCGGcUGGCGCAUUg -5'
29123 3' -55.1 NC_006146.1 + 68691 0.66 0.946194
Target:  5'- aCGGaucaccugaagCGCUUugACGCCGuCCGCGUc-- -3'
miRNA:   3'- gGCCa----------GCGAA--UGCGGCuGGCGCAuug -5'
29123 3' -55.1 NC_006146.1 + 71683 0.67 0.941778
Target:  5'- gUGGUCGggcGCGCCGagGCCGCGg--- -3'
miRNA:   3'- gGCCAGCgaaUGCGGC--UGGCGCauug -5'
29123 3' -55.1 NC_006146.1 + 128799 0.67 0.941778
Target:  5'- cUCGuaGUCGU--GCGCCGuCCGCGaagGACg -3'
miRNA:   3'- -GGC--CAGCGaaUGCGGCuGGCGCa--UUG- -5'
29123 3' -55.1 NC_006146.1 + 100797 0.67 0.932259
Target:  5'- gCGGUCuucauCGUgGACUGCGUGGCu -3'
miRNA:   3'- gGCCAGcgaauGCGgCUGGCGCAUUG- -5'
29123 3' -55.1 NC_006146.1 + 25373 0.67 0.927154
Target:  5'- uCCGGUCa---ACGCCGuccGCCGCGgcaagGGCu -3'
miRNA:   3'- -GGCCAGcgaaUGCGGC---UGGCGCa----UUG- -5'
29123 3' -55.1 NC_006146.1 + 67216 0.67 0.927154
Target:  5'- gCCGGUCGCcUG-GCCGGCCa-GgcACa -3'
miRNA:   3'- -GGCCAGCGaAUgCGGCUGGcgCauUG- -5'
29123 3' -55.1 NC_006146.1 + 71763 0.67 0.922362
Target:  5'- gCCGGUCGCUggagccccuguggagACGCCugaGGCCGgagGGCa -3'
miRNA:   3'- -GGCCAGCGAa--------------UGCGG---CUGGCgcaUUG- -5'
29123 3' -55.1 NC_006146.1 + 52901 0.68 0.904427
Target:  5'- aCGGcCGUgaGCuaCGGCCGUGUGAUg -3'
miRNA:   3'- gGCCaGCGaaUGcgGCUGGCGCAUUG- -5'
29123 3' -55.1 NC_006146.1 + 23738 0.68 0.904427
Target:  5'- gCCGGUCuGCgc-CGCCG-CCGgGUcAACu -3'
miRNA:   3'- -GGCCAG-CGaauGCGGCuGGCgCA-UUG- -5'
29123 3' -55.1 NC_006146.1 + 156859 0.68 0.898174
Target:  5'- gCCGG-CGCUUGCGCCugcccCCGCcu-GCu -3'
miRNA:   3'- -GGCCaGCGAAUGCGGcu---GGCGcauUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.