Results 1 - 20 of 34 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29123 | 3' | -55.1 | NC_006146.1 | + | 170146 | 0.66 | 0.954349 |
Target: 5'- cUCGGcugcacgCGCggcgGCGCCGGCCGgG-GGCu -3' miRNA: 3'- -GGCCa------GCGaa--UGCGGCUGGCgCaUUG- -5' |
|||||||
29123 | 3' | -55.1 | NC_006146.1 | + | 169215 | 0.66 | 0.954349 |
Target: 5'- cUCGGcugcacgCGCggcgGCGCCGGCCGgG-GGCu -3' miRNA: 3'- -GGCCa------GCGaa--UGCGGCUGGCgCaUUG- -5' |
|||||||
29123 | 3' | -55.1 | NC_006146.1 | + | 168283 | 0.66 | 0.954349 |
Target: 5'- cUCGGcugcacgCGCggcgGCGCCGGCCGgG-GGCu -3' miRNA: 3'- -GGCCa------GCGaa--UGCGGCUGGCgCaUUG- -5' |
|||||||
29123 | 3' | -55.1 | NC_006146.1 | + | 167351 | 0.66 | 0.954349 |
Target: 5'- cUCGGcugcacgCGCggcgGCGCCGGCCGgG-GGCu -3' miRNA: 3'- -GGCCa------GCGaa--UGCGGCUGGCgCaUUG- -5' |
|||||||
29123 | 3' | -55.1 | NC_006146.1 | + | 159337 | 0.66 | 0.947897 |
Target: 5'- gCCGG-CGUcucgUGCGCCG-CCuccagcauggcggggGCGUAGCu -3' miRNA: 3'- -GGCCaGCGa---AUGCGGCuGG---------------CGCAUUG- -5' |
|||||||
29123 | 3' | -55.1 | NC_006146.1 | + | 156859 | 0.68 | 0.898174 |
Target: 5'- gCCGG-CGCUUGCGCCugcccCCGCcu-GCu -3' miRNA: 3'- -GGCCaGCGAAUGCGGcu---GGCGcauUG- -5' |
|||||||
29123 | 3' | -55.1 | NC_006146.1 | + | 154648 | 0.69 | 0.878089 |
Target: 5'- uUGGcgCGCUgcCGCCGGCUGCaccgugGUGGCg -3' miRNA: 3'- gGCCa-GCGAauGCGGCUGGCG------CAUUG- -5' |
|||||||
29123 | 3' | -55.1 | NC_006146.1 | + | 143957 | 1.11 | 0.003388 |
Target: 5'- cCCGGUCGCUUACGCCGACCGCGUAACu -3' miRNA: 3'- -GGCCAGCGAAUGCGGCUGGCGCAUUG- -5' |
|||||||
29123 | 3' | -55.1 | NC_006146.1 | + | 128799 | 0.67 | 0.941778 |
Target: 5'- cUCGuaGUCGU--GCGCCGuCCGCGaagGACg -3' miRNA: 3'- -GGC--CAGCGaaUGCGGCuGGCGCa--UUG- -5' |
|||||||
29123 | 3' | -55.1 | NC_006146.1 | + | 127585 | 0.7 | 0.824067 |
Target: 5'- gCGGcCGaggccGCGCCGGCCGgGUGAg -3' miRNA: 3'- gGCCaGCgaa--UGCGGCUGGCgCAUUg -5' |
|||||||
29123 | 3' | -55.1 | NC_006146.1 | + | 120791 | 0.68 | 0.885002 |
Target: 5'- gCGGagGU---CGCCGGuCCGCGUGGCc -3' miRNA: 3'- gGCCagCGaauGCGGCU-GGCGCAUUG- -5' |
|||||||
29123 | 3' | -55.1 | NC_006146.1 | + | 118130 | 0.68 | 0.885002 |
Target: 5'- uUCGGcCGCUU-CGCCGGCauccaguGCGUcAGCa -3' miRNA: 3'- -GGCCaGCGAAuGCGGCUGg------CGCA-UUG- -5' |
|||||||
29123 | 3' | -55.1 | NC_006146.1 | + | 117880 | 0.66 | 0.946194 |
Target: 5'- gCGGcCGCg---GCCaGCCGCGUGAg -3' miRNA: 3'- gGCCaGCGaaugCGGcUGGCGCAUUg -5' |
|||||||
29123 | 3' | -55.1 | NC_006146.1 | + | 112760 | 0.69 | 0.878089 |
Target: 5'- gCCGGUCaaugugacuuGCUUugGCUGugUGCGc--- -3' miRNA: 3'- -GGCCAG----------CGAAugCGGCugGCGCauug -5' |
|||||||
29123 | 3' | -55.1 | NC_006146.1 | + | 109315 | 0.69 | 0.863632 |
Target: 5'- gCGGcCGCUgcaGCCGGCUcuuccucaGCGUGGCc -3' miRNA: 3'- gGCCaGCGAaugCGGCUGG--------CGCAUUG- -5' |
|||||||
29123 | 3' | -55.1 | NC_006146.1 | + | 104973 | 0.69 | 0.870964 |
Target: 5'- gCCGGUCGCUgugggGCaaaucaaCCGACCGCc---- -3' miRNA: 3'- -GGCCAGCGAa----UGc------GGCUGGCGcauug -5' |
|||||||
29123 | 3' | -55.1 | NC_006146.1 | + | 100797 | 0.67 | 0.932259 |
Target: 5'- gCGGUCuucauCGUgGACUGCGUGGCu -3' miRNA: 3'- gGCCAGcgaauGCGgCUGGCGCAUUG- -5' |
|||||||
29123 | 3' | -55.1 | NC_006146.1 | + | 76403 | 0.66 | 0.954349 |
Target: 5'- aCCGGgg----GCGCCGACggcgGCGUGACc -3' miRNA: 3'- -GGCCagcgaaUGCGGCUGg---CGCAUUG- -5' |
|||||||
29123 | 3' | -55.1 | NC_006146.1 | + | 71763 | 0.67 | 0.922362 |
Target: 5'- gCCGGUCGCUggagccccuguggagACGCCugaGGCCGgagGGCa -3' miRNA: 3'- -GGCCAGCGAa--------------UGCGG---CUGGCgcaUUG- -5' |
|||||||
29123 | 3' | -55.1 | NC_006146.1 | + | 71683 | 0.67 | 0.941778 |
Target: 5'- gUGGUCGggcGCGCCGagGCCGCGg--- -3' miRNA: 3'- gGCCAGCgaaUGCGGC--UGGCGCauug -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home