miRNA display CGI


Results 41 - 60 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29124 5' -58.9 NC_006146.1 + 56846 0.67 0.730709
Target:  5'- uCUGGcgGCgGGgGCgGCAGCuuuggCUGGGGCu -3'
miRNA:   3'- -GACCa-UGaCCgCGgCGUUG-----GACCCUG- -5'
29124 5' -58.9 NC_006146.1 + 162328 0.67 0.730709
Target:  5'- uCUGc--CUGGUGCUGCAGCCcGGGcuGCa -3'
miRNA:   3'- -GACcauGACCGCGGCGUUGGaCCC--UG- -5'
29124 5' -58.9 NC_006146.1 + 26059 0.67 0.730709
Target:  5'- gCUGcaAUUGGCccGCCGCAACgUGGGcCg -3'
miRNA:   3'- -GACcaUGACCG--CGGCGUUGgACCCuG- -5'
29124 5' -58.9 NC_006146.1 + 42702 0.67 0.72103
Target:  5'- uCUGGccc-GGCGCCGCGGcgccccCCUGGGcCg -3'
miRNA:   3'- -GACCaugaCCGCGGCGUU------GGACCCuG- -5'
29124 5' -58.9 NC_006146.1 + 48997 0.67 0.72103
Target:  5'- cCUGGgagGCUggGGCGuuGCccAGCUUGGGGa -3'
miRNA:   3'- -GACCa--UGA--CCGCggCG--UUGGACCCUg -5'
29124 5' -58.9 NC_006146.1 + 23099 0.67 0.72103
Target:  5'- cCUGGUucaugcugucACUGcCGCUGCucuuCCUGGGAg -3'
miRNA:   3'- -GACCA----------UGACcGCGGCGuu--GGACCCUg -5'
29124 5' -58.9 NC_006146.1 + 19493 0.67 0.72103
Target:  5'- gCUGGUacaGCUGcCGCCGCGccaucccccGCCUgcagcagcGGGACu -3'
miRNA:   3'- -GACCA---UGACcGCGGCGU---------UGGA--------CCCUG- -5'
29124 5' -58.9 NC_006146.1 + 104413 0.68 0.711278
Target:  5'- -cGGUGCauccGGCuGCCGCAuACCUacaagguggacaGGGGCg -3'
miRNA:   3'- gaCCAUGa---CCG-CGGCGU-UGGA------------CCCUG- -5'
29124 5' -58.9 NC_006146.1 + 27349 0.68 0.711278
Target:  5'- -cGGg--UGGCGCgGCAagGCCggGGGGCg -3'
miRNA:   3'- gaCCaugACCGCGgCGU--UGGa-CCCUG- -5'
29124 5' -58.9 NC_006146.1 + 10287 0.68 0.70146
Target:  5'- -cGGaGCUGGCauGCCagGCGGCCgaccucgGGGGCa -3'
miRNA:   3'- gaCCaUGACCG--CGG--CGUUGGa------CCCUG- -5'
29124 5' -58.9 NC_006146.1 + 84533 0.68 0.691587
Target:  5'- -cGGUACaGGCGCCGUGGCaggugguUGGG-Ca -3'
miRNA:   3'- gaCCAUGaCCGCGGCGUUGg------ACCCuG- -5'
29124 5' -58.9 NC_006146.1 + 112388 0.68 0.681666
Target:  5'- --aGUugUGGaCGCCGCAggggcugccguGCCUGuGGAUg -3'
miRNA:   3'- gacCAugACC-GCGGCGU-----------UGGAC-CCUG- -5'
29124 5' -58.9 NC_006146.1 + 5070 0.68 0.661715
Target:  5'- gCUGGccguUGgaGGCGUccaCGCGGCCaGGGACg -3'
miRNA:   3'- -GACC----AUgaCCGCG---GCGUUGGaCCCUG- -5'
29124 5' -58.9 NC_006146.1 + 92171 0.69 0.611572
Target:  5'- gCUGGgg--GGCggGCC-CGGCCUGGGGCu -3'
miRNA:   3'- -GACCaugaCCG--CGGcGUUGGACCCUG- -5'
29124 5' -58.9 NC_006146.1 + 92052 0.69 0.611572
Target:  5'- gCUGGgg--GGCggGCC-CGGCCUGGGGCu -3'
miRNA:   3'- -GACCaugaCCG--CGGcGUUGGACCCUG- -5'
29124 5' -58.9 NC_006146.1 + 92111 0.69 0.611572
Target:  5'- gCUGGgg--GGCggGCC-CGGCCUGGGGCu -3'
miRNA:   3'- -GACCaugaCCG--CGGcGUUGGACCCUG- -5'
29124 5' -58.9 NC_006146.1 + 92141 0.69 0.611572
Target:  5'- gCUGGgg--GGCggGCC-CGGCCUGGGGCu -3'
miRNA:   3'- -GACCaugaCCG--CGGcGUUGGACCCUG- -5'
29124 5' -58.9 NC_006146.1 + 92291 0.69 0.611572
Target:  5'- gCUGGgg--GGCggGCC-CGGCCUGGGGCu -3'
miRNA:   3'- -GACCaugaCCG--CGGcGUUGGACCCUG- -5'
29124 5' -58.9 NC_006146.1 + 92261 0.69 0.611572
Target:  5'- gCUGGgg--GGCggGCC-CGGCCUGGGGCu -3'
miRNA:   3'- -GACCaugaCCG--CGGcGUUGGACCCUG- -5'
29124 5' -58.9 NC_006146.1 + 92201 0.69 0.611572
Target:  5'- gCUGGgg--GGCggGCC-CGGCCUGGGGCu -3'
miRNA:   3'- -GACCaugaCCG--CGGcGUUGGACCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.