miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29127 5' -62.3 NC_006146.1 + 4953 0.74 0.258531
Target:  5'- cCCCGGGGaCCAGGGgccacGAGAGCcuccugGCg -3'
miRNA:   3'- -GGGCCCC-GGUCCCac---CUCUCGua----CGa -5'
29127 5' -62.3 NC_006146.1 + 5200 0.68 0.512348
Target:  5'- uCCCuGGGCCuGGG-GGAGcuaGGgGUGCa -3'
miRNA:   3'- -GGGcCCCGGuCCCaCCUC---UCgUACGa -5'
29127 5' -62.3 NC_006146.1 + 12633 0.66 0.667464
Target:  5'- aCCCGGGGCUGGGccagaguccccccgaGUGGcucaAGGGCcacuaccagacgcuGUGCa -3'
miRNA:   3'- -GGGCCCCGGUCC---------------CACC----UCUCG--------------UACGa -5'
29127 5' -62.3 NC_006146.1 + 12859 0.68 0.540525
Target:  5'- gCCUGGGGCgAggcuGGGUGGcuGGGCAgGCc -3'
miRNA:   3'- -GGGCCCCGgU----CCCACCu-CUCGUaCGa -5'
29127 5' -62.3 NC_006146.1 + 14845 0.71 0.374793
Target:  5'- gCCCGGGGCCGcGGGaGGccgagGGGGCA-GCc -3'
miRNA:   3'- -GGGCCCCGGU-CCCaCC-----UCUCGUaCGa -5'
29127 5' -62.3 NC_006146.1 + 18385 0.66 0.676198
Target:  5'- uCCUGGuGGCCGGGGUGGuGAu------ -3'
miRNA:   3'- -GGGCC-CCGGUCCCACCuCUcguacga -5'
29127 5' -62.3 NC_006146.1 + 18852 0.77 0.169322
Target:  5'- cCCCGGGcgcuGCCGGGGUGGuGGaCGUGCg -3'
miRNA:   3'- -GGGCCC----CGGUCCCACCuCUcGUACGa -5'
29127 5' -62.3 NC_006146.1 + 26140 0.66 0.627489
Target:  5'- aCCGGGGCCc-GGUcGGAaaGAGCAcggggGCUu -3'
miRNA:   3'- gGGCCCCGGucCCA-CCU--CUCGUa----CGA- -5'
29127 5' -62.3 NC_006146.1 + 26270 0.67 0.607979
Target:  5'- -aCGGGuggcggaauuaGCCuGGGUGGAgGGGCcgGCa -3'
miRNA:   3'- ggGCCC-----------CGGuCCCACCU-CUCGuaCGa -5'
29127 5' -62.3 NC_006146.1 + 28789 0.68 0.512348
Target:  5'- cCCUGGGGCCgAGGGcucacuUGGGGcAGCccaGCUu -3'
miRNA:   3'- -GGGCCCCGG-UCCC------ACCUC-UCGua-CGA- -5'
29127 5' -62.3 NC_006146.1 + 32138 0.72 0.344507
Target:  5'- cCCCGGGGUgcUGGGGUGGGGgaugGGCucagGCa -3'
miRNA:   3'- -GGGCCCCG--GUCCCACCUC----UCGua--CGa -5'
29127 5' -62.3 NC_006146.1 + 33223 0.67 0.617729
Target:  5'- cUCCGGGGCagccGGGUGGcc-GCcgGCg -3'
miRNA:   3'- -GGGCCCCGgu--CCCACCucuCGuaCGa -5'
29127 5' -62.3 NC_006146.1 + 33252 0.67 0.569204
Target:  5'- gUCCGccGGGCCGcugccccgcuccGGGUGGGGGGUGgcccgGCUg -3'
miRNA:   3'- -GGGC--CCCGGU------------CCCACCUCUCGUa----CGA- -5'
29127 5' -62.3 NC_006146.1 + 33329 0.67 0.588534
Target:  5'- cUCCGGGGUCcGGGUGcuccGGGGCA-GCc -3'
miRNA:   3'- -GGGCCCCGGuCCCACc---UCUCGUaCGa -5'
29127 5' -62.3 NC_006146.1 + 34078 0.77 0.161318
Target:  5'- -aCGGGGCCGGGGgucccGGGGGGCAgccGCg -3'
miRNA:   3'- ggGCCCCGGUCCCa----CCUCUCGUa--CGa -5'
29127 5' -62.3 NC_006146.1 + 34151 0.72 0.322972
Target:  5'- uCCCGGagccccGGCgAGGGUGGGGGGUgcGCc -3'
miRNA:   3'- -GGGCC------CCGgUCCCACCUCUCGuaCGa -5'
29127 5' -62.3 NC_006146.1 + 36217 0.7 0.431959
Target:  5'- cCCCGGGagcgcaagccgGCCGGGGaGGAG-GCAggGCg -3'
miRNA:   3'- -GGGCCC-----------CGGUCCCaCCUCuCGUa-CGa -5'
29127 5' -62.3 NC_006146.1 + 39554 0.66 0.676198
Target:  5'- gCUGGaugucaauGGCCAGGauccUGGAGGGCAUGa- -3'
miRNA:   3'- gGGCC--------CCGGUCCc---ACCUCUCGUACga -5'
29127 5' -62.3 NC_006146.1 + 40489 0.73 0.264473
Target:  5'- aCUCGGGGUCucuGGaGGUGGAGAG-AUGCUc -3'
miRNA:   3'- -GGGCCCCGG---UC-CCACCUCUCgUACGA- -5'
29127 5' -62.3 NC_006146.1 + 41059 0.74 0.23045
Target:  5'- gCCCugGGGGCCucGGGGUGGAGGGag-GCc -3'
miRNA:   3'- -GGG--CCCCGG--UCCCACCUCUCguaCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.