miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29127 5' -62.3 NC_006146.1 + 148513 1.09 0.000871
Target:  5'- cCCCGGGGCCAGGGUGGAGAGCAUGCUg -3'
miRNA:   3'- -GGGCCCCGGUCCCACCUCUCGUACGA- -5'
29127 5' -62.3 NC_006146.1 + 135180 0.72 0.344507
Target:  5'- gCUCGGGGCCGGGGgccgGGugccccuGGGUccGCUg -3'
miRNA:   3'- -GGGCCCCGGUCCCa---CCu------CUCGuaCGA- -5'
29127 5' -62.3 NC_006146.1 + 135366 0.72 0.344507
Target:  5'- gCUCGGGGCCGGGGgccgGGugccccuGGGUccGCUg -3'
miRNA:   3'- -GGGCCCCGGUCCCa---CCu------CUCGuaCGA- -5'
29127 5' -62.3 NC_006146.1 + 106201 0.65 0.683939
Target:  5'- uCCCGGGccuccuGCCAGGGccugguguccugGGGGAGUAUa-- -3'
miRNA:   3'- -GGGCCC------CGGUCCCa-----------CCUCUCGUAcga -5'
29127 5' -62.3 NC_006146.1 + 170231 0.84 0.056072
Target:  5'- uCCCGGGGCgGGGGgucgGGcGGGCAUGCUc -3'
miRNA:   3'- -GGGCCCCGgUCCCa---CCuCUCGUACGA- -5'
29127 5' -62.3 NC_006146.1 + 34078 0.77 0.161318
Target:  5'- -aCGGGGCCGGGGgucccGGGGGGCAgccGCg -3'
miRNA:   3'- ggGCCCCGGUCCCa----CCUCUCGUa--CGa -5'
29127 5' -62.3 NC_006146.1 + 167271 0.75 0.214866
Target:  5'- gCCCGGGGCCGcGcGUGGGGAugGCcgGCg -3'
miRNA:   3'- -GGGCCCCGGUcC-CACCUCU--CGuaCGa -5'
29127 5' -62.3 NC_006146.1 + 168203 0.75 0.214866
Target:  5'- gCCCGGGGCCGcGcGUGGGGAugGCcgGCg -3'
miRNA:   3'- -GGGCCCCGGUcC-CACCUCU--CGuaCGa -5'
29127 5' -62.3 NC_006146.1 + 137847 0.75 0.225152
Target:  5'- --gGGGGCuCGGGGUGGGuGGGCGUGUc -3'
miRNA:   3'- gggCCCCG-GUCCCACCU-CUCGUACGa -5'
29127 5' -62.3 NC_006146.1 + 34151 0.72 0.322972
Target:  5'- uCCCGGagccccGGCgAGGGUGGGGGGUgcGCc -3'
miRNA:   3'- -GGGCC------CCGgUCCCACCUCUCGuaCGa -5'
29127 5' -62.3 NC_006146.1 + 4953 0.74 0.258531
Target:  5'- cCCCGGGGaCCAGGGgccacGAGAGCcuccugGCg -3'
miRNA:   3'- -GGGCCCC-GGUCCCac---CUCUCGua----CGa -5'
29127 5' -62.3 NC_006146.1 + 170067 0.75 0.214866
Target:  5'- gCCCGGGGCCGcGcGUGGGGAugGCcgGCg -3'
miRNA:   3'- -GGGCCCCGGUcC-CACCUCU--CGuaCGa -5'
29127 5' -62.3 NC_006146.1 + 167436 0.84 0.056072
Target:  5'- uCCCGGGGCgGGGGgucgGGcGGGCAUGCUc -3'
miRNA:   3'- -GGGCCCCGgUCCCa---CCuCUCGUACGA- -5'
29127 5' -62.3 NC_006146.1 + 40489 0.73 0.264473
Target:  5'- aCUCGGGGUCucuGGaGGUGGAGAG-AUGCUc -3'
miRNA:   3'- -GGGCCCCGG---UC-CCACCUCUCgUACGA- -5'
29127 5' -62.3 NC_006146.1 + 168368 0.84 0.056072
Target:  5'- uCCCGGGGCgGGGGgucgGGcGGGCAUGCUc -3'
miRNA:   3'- -GGGCCCCGgUCCCa---CCuCUCGUACGA- -5'
29127 5' -62.3 NC_006146.1 + 169135 0.75 0.214866
Target:  5'- gCCCGGGGCCGcGcGUGGGGAugGCcgGCg -3'
miRNA:   3'- -GGGCCCCGGUcC-CACCUCU--CGuaCGa -5'
29127 5' -62.3 NC_006146.1 + 60127 0.72 0.309182
Target:  5'- --aGGGGCCGGGGgagggaccuggUGGGGGGUGUGUg -3'
miRNA:   3'- gggCCCCGGUCCC-----------ACCUCUCGUACGa -5'
29127 5' -62.3 NC_006146.1 + 135273 0.72 0.344507
Target:  5'- gCUCGGGGCCGGGGgccgGGugccccuGGGUccGCUg -3'
miRNA:   3'- -GGGCCCCGGUCCCa---CCu------CUCGuaCGA- -5'
29127 5' -62.3 NC_006146.1 + 169300 0.84 0.056072
Target:  5'- uCCCGGGGCgGGGGgucgGGcGGGCAUGCUc -3'
miRNA:   3'- -GGGCCCCGgUCCCa---CCuCUCGUACGA- -5'
29127 5' -62.3 NC_006146.1 + 137982 0.76 0.177681
Target:  5'- uCCCgGGGGCCcggcGGGGUGGGGGGUgcGCc -3'
miRNA:   3'- -GGG-CCCCGG----UCCCACCUCUCGuaCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.