miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29130 3' -55 NC_006146.1 + 41274 0.66 0.958402
Target:  5'- aGCaCGCGcCCGCGgaggacccGGCgaCGGAGAc -3'
miRNA:   3'- gCG-GCGCaGGUGCaa------CCGaaGCUUCU- -5'
29130 3' -55 NC_006146.1 + 146831 0.66 0.958402
Target:  5'- gGCCGCG-CCAgCGUagagcccgggccUGGC-UCGggGc -3'
miRNA:   3'- gCGGCGCaGGU-GCA------------ACCGaAGCuuCu -5'
29130 3' -55 NC_006146.1 + 110870 0.66 0.946446
Target:  5'- aCGCUGCGUCU-CGggcucgGGCgcaggCGggGAc -3'
miRNA:   3'- -GCGGCGCAGGuGCaa----CCGaa---GCuuCU- -5'
29130 3' -55 NC_006146.1 + 120798 0.66 0.946446
Target:  5'- uCGCCG-GUCCGCG-UGGCcggacaagCGggGc -3'
miRNA:   3'- -GCGGCgCAGGUGCaACCGaa------GCuuCu -5'
29130 3' -55 NC_006146.1 + 158131 0.66 0.946446
Target:  5'- gGCCGCGUCCAgGUccGGCaggUCacAGGu -3'
miRNA:   3'- gCGGCGCAGGUgCAa-CCGa--AGcuUCU- -5'
29130 3' -55 NC_006146.1 + 33310 0.66 0.942006
Target:  5'- cCGCCGCucgGUCCugG--GGCUcCGggGu -3'
miRNA:   3'- -GCGGCG---CAGGugCaaCCGAaGCuuCu -5'
29130 3' -55 NC_006146.1 + 80408 0.66 0.942006
Target:  5'- uCGCUGCG-CCACaucUGGCUUCacAGAc -3'
miRNA:   3'- -GCGGCGCaGGUGca-ACCGAAGcuUCU- -5'
29130 3' -55 NC_006146.1 + 44096 0.67 0.937333
Target:  5'- aCGCCGCGgaaaccUCCAgGccccGGCUgcccggCGAGGAg -3'
miRNA:   3'- -GCGGCGC------AGGUgCaa--CCGAa-----GCUUCU- -5'
29130 3' -55 NC_006146.1 + 56618 0.67 0.937332
Target:  5'- uCGCCgGCGUCCAUagUGGCagccaUGAAGGu -3'
miRNA:   3'- -GCGG-CGCAGGUGcaACCGaa---GCUUCU- -5'
29130 3' -55 NC_006146.1 + 45812 0.67 0.937332
Target:  5'- gGCCGcCG-CCACGgccGCcUCGAAGAc -3'
miRNA:   3'- gCGGC-GCaGGUGCaacCGaAGCUUCU- -5'
29130 3' -55 NC_006146.1 + 102370 0.67 0.937332
Target:  5'- uGCCcccaUCCACGUUGGCUaUGGAGu -3'
miRNA:   3'- gCGGcgc-AGGUGCAACCGAaGCUUCu -5'
29130 3' -55 NC_006146.1 + 42793 0.67 0.921907
Target:  5'- gGCCGCcucggCCAgGUUGGCggucUCGcAGAg -3'
miRNA:   3'- gCGGCGca---GGUgCAACCGa---AGCuUCU- -5'
29130 3' -55 NC_006146.1 + 162935 0.67 0.916295
Target:  5'- -uCUGCGUCUcaggugcugggACGUUGGCaUCGGAGu -3'
miRNA:   3'- gcGGCGCAGG-----------UGCAACCGaAGCUUCu -5'
29130 3' -55 NC_006146.1 + 41570 0.67 0.916295
Target:  5'- gGCCGC-UCCGCGc--GCUgcgCGAGGAc -3'
miRNA:   3'- gCGGCGcAGGUGCaacCGAa--GCUUCU- -5'
29130 3' -55 NC_006146.1 + 113753 0.68 0.910449
Target:  5'- gGCC-CGUCC-CGUccggGGCUcggggUCGGAGAc -3'
miRNA:   3'- gCGGcGCAGGuGCAa---CCGA-----AGCUUCU- -5'
29130 3' -55 NC_006146.1 + 52351 0.68 0.910449
Target:  5'- gGCgGCGUCCuu-UUGGCagugggggUCGAAGAg -3'
miRNA:   3'- gCGgCGCAGGugcAACCGa-------AGCUUCU- -5'
29130 3' -55 NC_006146.1 + 71632 0.68 0.898062
Target:  5'- aGCCaCGUCUGCGUgcgggaaGGCggCGAGGGa -3'
miRNA:   3'- gCGGcGCAGGUGCAa------CCGaaGCUUCU- -5'
29130 3' -55 NC_006146.1 + 2372 0.68 0.897418
Target:  5'- aGCCgggacagGCGUCCGCG--GGCUUCcaGAGGGc -3'
miRNA:   3'- gCGG-------CGCAGGUGCaaCCGAAG--CUUCU- -5'
29130 3' -55 NC_006146.1 + 51174 0.68 0.891526
Target:  5'- gGCUGUGgagCCGgGgaGGCUgcUCGAGGAa -3'
miRNA:   3'- gCGGCGCa--GGUgCaaCCGA--AGCUUCU- -5'
29130 3' -55 NC_006146.1 + 121479 0.68 0.877786
Target:  5'- aCGCCGgGUCCAuCGUgggGGCcgCcAAGAa -3'
miRNA:   3'- -GCGGCgCAGGU-GCAa--CCGaaGcUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.