miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29130 5' -58.5 NC_006146.1 + 43718 0.65 0.840829
Target:  5'- gGUCCUggcggauuuccuccGCccgGGCCAgGUGGUCGCGcaUGAc -3'
miRNA:   3'- aCAGGA--------------CG---UCGGUgCACCGGUGC--ACU- -5'
29130 5' -58.5 NC_006146.1 + 108415 0.66 0.835189
Target:  5'- cUGUCCgucugacgugGCGGCCAgGUGGaCGCaGUGc -3'
miRNA:   3'- -ACAGGa---------CGUCGGUgCACCgGUG-CACu -5'
29130 5' -58.5 NC_006146.1 + 166828 0.66 0.826983
Target:  5'- cUGUCgacGCGGCC-CG-GGuCCGCGUGGa -3'
miRNA:   3'- -ACAGga-CGUCGGuGCaCC-GGUGCACU- -5'
29130 5' -58.5 NC_006146.1 + 55928 0.66 0.826983
Target:  5'- aUGUCC-GCGGCCGUG-GGCUgcuGCGUGc -3'
miRNA:   3'- -ACAGGaCGUCGGUGCaCCGG---UGCACu -5'
29130 5' -58.5 NC_006146.1 + 12029 0.66 0.826983
Target:  5'- --aCCgGCAGCUACGUGGCgG-GUGc -3'
miRNA:   3'- acaGGaCGUCGGUGCACCGgUgCACu -5'
29130 5' -58.5 NC_006146.1 + 52885 0.66 0.810064
Target:  5'- gGUCCUcGCGGCCcCGagccccgcaUGGUCuGCGUGGc -3'
miRNA:   3'- aCAGGA-CGUCGGuGC---------ACCGG-UGCACU- -5'
29130 5' -58.5 NC_006146.1 + 101042 0.66 0.801368
Target:  5'- gGUCCUGCAuGCC---UGcGCCuGCGUGAc -3'
miRNA:   3'- aCAGGACGU-CGGugcAC-CGG-UGCACU- -5'
29130 5' -58.5 NC_006146.1 + 50087 0.67 0.792523
Target:  5'- cGUCCacgGCGGCCcCGcuuguccGGCCACGcgGAc -3'
miRNA:   3'- aCAGGa--CGUCGGuGCa------CCGGUGCa-CU- -5'
29130 5' -58.5 NC_006146.1 + 108954 0.67 0.783539
Target:  5'- gUGUCCUG-AGCCuugaucacCG-GGCC-CGUGAa -3'
miRNA:   3'- -ACAGGACgUCGGu-------GCaCCGGuGCACU- -5'
29130 5' -58.5 NC_006146.1 + 58959 0.67 0.774424
Target:  5'- gGUgCUGCAGCCcucgagggagACgGUGGCCACcUGc -3'
miRNA:   3'- aCAgGACGUCGG----------UG-CACCGGUGcACu -5'
29130 5' -58.5 NC_006146.1 + 17683 0.67 0.765186
Target:  5'- aUGUCCgGCAuCUACGggcGGCC-CGUGGc -3'
miRNA:   3'- -ACAGGaCGUcGGUGCa--CCGGuGCACU- -5'
29130 5' -58.5 NC_006146.1 + 3728 0.67 0.755835
Target:  5'- gGUCUcugGgGGCCGCGUGGCCcuucagcccgGgGUGGg -3'
miRNA:   3'- aCAGGa--CgUCGGUGCACCGG----------UgCACU- -5'
29130 5' -58.5 NC_006146.1 + 47294 0.67 0.746378
Target:  5'- cGUCCUGCAGCCGggacuccuccCG-GGCCuCcUGGa -3'
miRNA:   3'- aCAGGACGUCGGU----------GCaCCGGuGcACU- -5'
29130 5' -58.5 NC_006146.1 + 5483 0.68 0.727183
Target:  5'- cUGUCCUGCuG-CACcUGGCCugGUu- -3'
miRNA:   3'- -ACAGGACGuCgGUGcACCGGugCAcu -5'
29130 5' -58.5 NC_006146.1 + 89071 0.68 0.727183
Target:  5'- aUGgagCCUGCuGGUguUGUGGCCACGg-- -3'
miRNA:   3'- -ACa--GGACG-UCGguGCACCGGUGCacu -5'
29130 5' -58.5 NC_006146.1 + 120782 0.68 0.721359
Target:  5'- aUGUCCcugGCGGaggucgccgguCCGCGUGGCCGgacaagcggggccgcCGUGGa -3'
miRNA:   3'- -ACAGGa--CGUC-----------GGUGCACCGGU---------------GCACU- -5'
29130 5' -58.5 NC_006146.1 + 42626 0.68 0.697819
Target:  5'- cGUgCUGaCGuGCCACGccagcGGCCGCGUGu -3'
miRNA:   3'- aCAgGAC-GU-CGGUGCa----CCGGUGCACu -5'
29130 5' -58.5 NC_006146.1 + 33099 0.68 0.687913
Target:  5'- -cUCUgggGCAGCCGgGUGGCCGCc--- -3'
miRNA:   3'- acAGGa--CGUCGGUgCACCGGUGcacu -5'
29130 5' -58.5 NC_006146.1 + 4355 0.68 0.687913
Target:  5'- -cUCUU-CAGCgACGUGGCCACGg-- -3'
miRNA:   3'- acAGGAcGUCGgUGCACCGGUGCacu -5'
29130 5' -58.5 NC_006146.1 + 55183 0.69 0.677962
Target:  5'- cGUCCcaggcUGCGGCCGCGgcgGGCgaGCGUc- -3'
miRNA:   3'- aCAGG-----ACGUCGGUGCa--CCGg-UGCAcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.