Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29130 | 5' | -58.5 | NC_006146.1 | + | 166828 | 0.66 | 0.826983 |
Target: 5'- cUGUCgacGCGGCC-CG-GGuCCGCGUGGa -3' miRNA: 3'- -ACAGga-CGUCGGuGCaCC-GGUGCACU- -5' |
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29130 | 5' | -58.5 | NC_006146.1 | + | 163684 | 0.69 | 0.627828 |
Target: 5'- aGUUgUGCAGgCGCGUGGgcCUugGUGGg -3' miRNA: 3'- aCAGgACGUCgGUGCACC--GGugCACU- -5' |
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29130 | 5' | -58.5 | NC_006146.1 | + | 157519 | 0.7 | 0.577764 |
Target: 5'- aGUCCguggccgcGCAGaCCACgGUGGUCGCGgUGAg -3' miRNA: 3'- aCAGGa-------CGUC-GGUG-CACCGGUGC-ACU- -5' |
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29130 | 5' | -58.5 | NC_006146.1 | + | 155200 | 0.7 | 0.597723 |
Target: 5'- -cUCCU-CGGCCA-GUGGCCcCGUGAu -3' miRNA: 3'- acAGGAcGUCGGUgCACCGGuGCACU- -5' |
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29130 | 5' | -58.5 | NC_006146.1 | + | 151512 | 1.09 | 0.001842 |
Target: 5'- uUGUCCUGCAGCCACGUGGCCACGUGAg -3' miRNA: 3'- -ACAGGACGUCGGUGCACCGGUGCACU- -5' |
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29130 | 5' | -58.5 | NC_006146.1 | + | 120782 | 0.68 | 0.721359 |
Target: 5'- aUGUCCcugGCGGaggucgccgguCCGCGUGGCCGgacaagcggggccgcCGUGGa -3' miRNA: 3'- -ACAGGa--CGUC-----------GGUGCACCGGU---------------GCACU- -5' |
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29130 | 5' | -58.5 | NC_006146.1 | + | 120499 | 0.71 | 0.518969 |
Target: 5'- cGUCCcugGCGGCCgaggACGcGaGCCGCGUGGa -3' miRNA: 3'- aCAGGa--CGUCGG----UGCaC-CGGUGCACU- -5' |
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29130 | 5' | -58.5 | NC_006146.1 | + | 117869 | 0.7 | 0.58673 |
Target: 5'- --aCCUcucggcgGCGGCCGCGgccaGCCGCGUGAg -3' miRNA: 3'- acaGGA-------CGUCGGUGCac--CGGUGCACU- -5' |
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29130 | 5' | -58.5 | NC_006146.1 | + | 115433 | 0.69 | 0.676965 |
Target: 5'- cGUUCUcgcccGCGGCCAUcgagcggGUGGCCACGg-- -3' miRNA: 3'- aCAGGA-----CGUCGGUG-------CACCGGUGCacu -5' |
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29130 | 5' | -58.5 | NC_006146.1 | + | 108954 | 0.67 | 0.783539 |
Target: 5'- gUGUCCUG-AGCCuugaucacCG-GGCC-CGUGAa -3' miRNA: 3'- -ACAGGACgUCGGu-------GCaCCGGuGCACU- -5' |
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29130 | 5' | -58.5 | NC_006146.1 | + | 108415 | 0.66 | 0.835189 |
Target: 5'- cUGUCCgucugacgugGCGGCCAgGUGGaCGCaGUGc -3' miRNA: 3'- -ACAGGa---------CGUCGGUgCACCgGUG-CACu -5' |
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29130 | 5' | -58.5 | NC_006146.1 | + | 101042 | 0.66 | 0.801368 |
Target: 5'- gGUCCUGCAuGCC---UGcGCCuGCGUGAc -3' miRNA: 3'- aCAGGACGU-CGGugcAC-CGG-UGCACU- -5' |
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29130 | 5' | -58.5 | NC_006146.1 | + | 100214 | 0.69 | 0.627828 |
Target: 5'- --aCCagGCGGCC-CGUGGCCugaGUGAu -3' miRNA: 3'- acaGGa-CGUCGGuGCACCGGug-CACU- -5' |
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29130 | 5' | -58.5 | NC_006146.1 | + | 97552 | 0.7 | 0.587728 |
Target: 5'- aGUUCUGCGGCUACGU--CCuCGUGAg -3' miRNA: 3'- aCAGGACGUCGGUGCAccGGuGCACU- -5' |
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29130 | 5' | -58.5 | NC_006146.1 | + | 89071 | 0.68 | 0.727183 |
Target: 5'- aUGgagCCUGCuGGUguUGUGGCCACGg-- -3' miRNA: 3'- -ACa--GGACG-UCGguGCACCGGUGCacu -5' |
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29130 | 5' | -58.5 | NC_006146.1 | + | 58959 | 0.67 | 0.774424 |
Target: 5'- gGUgCUGCAGCCcucgagggagACgGUGGCCACcUGc -3' miRNA: 3'- aCAgGACGUCGG----------UG-CACCGGUGcACu -5' |
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29130 | 5' | -58.5 | NC_006146.1 | + | 55928 | 0.66 | 0.826983 |
Target: 5'- aUGUCC-GCGGCCGUG-GGCUgcuGCGUGc -3' miRNA: 3'- -ACAGGaCGUCGGUGCaCCGG---UGCACu -5' |
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29130 | 5' | -58.5 | NC_006146.1 | + | 55183 | 0.69 | 0.677962 |
Target: 5'- cGUCCcaggcUGCGGCCGCGgcgGGCgaGCGUc- -3' miRNA: 3'- aCAGG-----ACGUCGGUGCa--CCGg-UGCAcu -5' |
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29130 | 5' | -58.5 | NC_006146.1 | + | 53338 | 0.77 | 0.269286 |
Target: 5'- gGcCCgGCGGCCGCGgGGCgGCGUGAg -3' miRNA: 3'- aCaGGaCGUCGGUGCaCCGgUGCACU- -5' |
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29130 | 5' | -58.5 | NC_006146.1 | + | 52885 | 0.66 | 0.810064 |
Target: 5'- gGUCCUcGCGGCCcCGagccccgcaUGGUCuGCGUGGc -3' miRNA: 3'- aCAGGA-CGUCGGuGC---------ACCGG-UGCACU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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