miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29130 5' -58.5 NC_006146.1 + 43718 0.65 0.840829
Target:  5'- gGUCCUggcggauuuccuccGCccgGGCCAgGUGGUCGCGcaUGAc -3'
miRNA:   3'- aCAGGA--------------CG---UCGGUgCACCGGUGC--ACU- -5'
29130 5' -58.5 NC_006146.1 + 47618 0.72 0.490452
Target:  5'- cUGUUCaucgGCAGCCACGUGGUgcUACGgGAg -3'
miRNA:   3'- -ACAGGa---CGUCGGUGCACCG--GUGCaCU- -5'
29130 5' -58.5 NC_006146.1 + 120499 0.71 0.518969
Target:  5'- cGUCCcugGCGGCCgaggACGcGaGCCGCGUGGa -3'
miRNA:   3'- aCAGGa--CGUCGG----UGCaC-CGGUGCACU- -5'
29130 5' -58.5 NC_006146.1 + 117869 0.7 0.58673
Target:  5'- --aCCUcucggcgGCGGCCGCGgccaGCCGCGUGAg -3'
miRNA:   3'- acaGGA-------CGUCGGUGCac--CGGUGCACU- -5'
29130 5' -58.5 NC_006146.1 + 19384 0.7 0.617781
Target:  5'- gUGUCUcacGUGGCCACGUGGCUGCa--- -3'
miRNA:   3'- -ACAGGa--CGUCGGUGCACCGGUGcacu -5'
29130 5' -58.5 NC_006146.1 + 100214 0.69 0.627828
Target:  5'- --aCCagGCGGCC-CGUGGCCugaGUGAu -3'
miRNA:   3'- acaGGa-CGUCGGuGCACCGGug-CACU- -5'
29130 5' -58.5 NC_006146.1 + 12724 0.69 0.667975
Target:  5'- gGUCCUGaCGGCCAaggaGGCCAagGUGGu -3'
miRNA:   3'- aCAGGAC-GUCGGUgca-CCGGUg-CACU- -5'
29130 5' -58.5 NC_006146.1 + 115433 0.69 0.676965
Target:  5'- cGUUCUcgcccGCGGCCAUcgagcggGUGGCCACGg-- -3'
miRNA:   3'- aCAGGA-----CGUCGGUG-------CACCGGUGCacu -5'
29130 5' -58.5 NC_006146.1 + 120782 0.68 0.721359
Target:  5'- aUGUCCcugGCGGaggucgccgguCCGCGUGGCCGgacaagcggggccgcCGUGGa -3'
miRNA:   3'- -ACAGGa--CGUC-----------GGUGCACCGGU---------------GCACU- -5'
29130 5' -58.5 NC_006146.1 + 166828 0.66 0.826983
Target:  5'- cUGUCgacGCGGCC-CG-GGuCCGCGUGGa -3'
miRNA:   3'- -ACAGga-CGUCGGuGCaCC-GGUGCACU- -5'
29130 5' -58.5 NC_006146.1 + 12029 0.66 0.826983
Target:  5'- --aCCgGCAGCUACGUGGCgG-GUGc -3'
miRNA:   3'- acaGGaCGUCGGUGCACCGgUgCACu -5'
29130 5' -58.5 NC_006146.1 + 108954 0.67 0.783539
Target:  5'- gUGUCCUG-AGCCuugaucacCG-GGCC-CGUGAa -3'
miRNA:   3'- -ACAGGACgUCGGu-------GCaCCGGuGCACU- -5'
29130 5' -58.5 NC_006146.1 + 17683 0.67 0.765186
Target:  5'- aUGUCCgGCAuCUACGggcGGCC-CGUGGc -3'
miRNA:   3'- -ACAGGaCGUcGGUGCa--CCGGuGCACU- -5'
29130 5' -58.5 NC_006146.1 + 89071 0.68 0.727183
Target:  5'- aUGgagCCUGCuGGUguUGUGGCCACGg-- -3'
miRNA:   3'- -ACa--GGACG-UCGguGCACCGGUGCacu -5'
29130 5' -58.5 NC_006146.1 + 5483 0.68 0.727183
Target:  5'- cUGUCCUGCuG-CACcUGGCCugGUu- -3'
miRNA:   3'- -ACAGGACGuCgGUGcACCGGugCAcu -5'
29130 5' -58.5 NC_006146.1 + 108415 0.66 0.835189
Target:  5'- cUGUCCgucugacgugGCGGCCAgGUGGaCGCaGUGc -3'
miRNA:   3'- -ACAGGa---------CGUCGGUgCACCgGUG-CACu -5'
29130 5' -58.5 NC_006146.1 + 53338 0.77 0.269286
Target:  5'- gGcCCgGCGGCCGCGgGGCgGCGUGAg -3'
miRNA:   3'- aCaGGaCGUCGGUGCaCCGgUGCACU- -5'
29130 5' -58.5 NC_006146.1 + 33342 0.76 0.275608
Target:  5'- gUGcUCCgggGCAGCCGgGUGGCCGCcgGUGGg -3'
miRNA:   3'- -AC-AGGa--CGUCGGUgCACCGGUG--CACU- -5'
29130 5' -58.5 NC_006146.1 + 33220 0.72 0.490452
Target:  5'- gUGcUCCgggGCAGCCGgGUGGCCGCc--- -3'
miRNA:   3'- -AC-AGGa--CGUCGGUgCACCGGUGcacu -5'
29130 5' -58.5 NC_006146.1 + 157519 0.7 0.577764
Target:  5'- aGUCCguggccgcGCAGaCCACgGUGGUCGCGgUGAg -3'
miRNA:   3'- aCAGGa-------CGUC-GGUG-CACCGGUGC-ACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.