miRNA display CGI


Results 81 - 100 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29131 3' -55.7 NC_006146.1 + 34699 0.69 0.811622
Target:  5'- aGGGGcaccCGGCccccggccccGAGCUCCAgGaCCGGGCa -3'
miRNA:   3'- -CUCCu---GCCG----------UUUGAGGUgCaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 34606 0.69 0.811622
Target:  5'- aGGGGcaccCGGCccccggccccGAGCUCCAgGaCCGGGCa -3'
miRNA:   3'- -CUCCu---GCCG----------UUUGAGGUgCaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 33491 0.69 0.811622
Target:  5'- aGGGGcaccCGGCccccggccccGAGCUCCAgGaCCGGGCa -3'
miRNA:   3'- -CUCCu---GCCG----------UUUGAGGUgCaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 33584 0.69 0.811622
Target:  5'- aGGGGcaccCGGCccccggccccGAGCUCCAgGaCCGGGCa -3'
miRNA:   3'- -CUCCu---GCCG----------UUUGAGGUgCaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 33677 0.69 0.811622
Target:  5'- aGGGGcaccCGGCccccggccccGAGCUCCAgGaCCGGGCa -3'
miRNA:   3'- -CUCCu---GCCG----------UUUGAGGUgCaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 33863 0.69 0.811622
Target:  5'- aGGGGcaccCGGCccccggccccGAGCUCCAgGaCCGGGCa -3'
miRNA:   3'- -CUCCu---GCCG----------UUUGAGGUgCaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 33955 0.69 0.811622
Target:  5'- aGGGGcaccCGGCccccggccccGAGCUCCAgGaCCGGGCa -3'
miRNA:   3'- -CUCCu---GCCG----------UUUGAGGUgCaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 34048 0.69 0.811622
Target:  5'- aGGGGcaccCGGCccccggccccGAGCUCCAgGaCCGGGCa -3'
miRNA:   3'- -CUCCu---GCCG----------UUUGAGGUgCaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 34141 0.69 0.811622
Target:  5'- aGGGGcaccCGGCccccggccccGAGCUCCAgGaCCGGGCa -3'
miRNA:   3'- -CUCCu---GCCG----------UUUGAGGUgCaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 34234 0.69 0.811622
Target:  5'- aGGGGcaccCGGCccccggccccGAGCUCCAgGaCCGGGCa -3'
miRNA:   3'- -CUCCu---GCCG----------UUUGAGGUgCaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 34327 0.69 0.811622
Target:  5'- aGGGGcaccCGGCccccggccccGAGCUCCAgGaCCGGGCa -3'
miRNA:   3'- -CUCCu---GCCG----------UUUGAGGUgCaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 34420 0.69 0.811622
Target:  5'- aGGGGcaccCGGCccccggccccGAGCUCCAgGaCCGGGCa -3'
miRNA:   3'- -CUCCu---GCCG----------UUUGAGGUgCaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 116756 0.69 0.818521
Target:  5'- gGAGGAgGGCAGgggggccgcuacuACUCCACGgaCCugcagacgcucaaGGGCg -3'
miRNA:   3'- -CUCCUgCCGUU-------------UGAGGUGCa-GG-------------UCCG- -5'
29131 3' -55.7 NC_006146.1 + 127582 0.69 0.820229
Target:  5'- -uGGGCGGCcGAggCCGCGccggCCGGGUg -3'
miRNA:   3'- cuCCUGCCGuUUgaGGUGCa---GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 110847 0.68 0.836931
Target:  5'- cGAGG-CGGCGcccgaucagaggGACgCUGCGUCuCGGGCu -3'
miRNA:   3'- -CUCCuGCCGU------------UUGaGGUGCAG-GUCCG- -5'
29131 3' -55.7 NC_006146.1 + 101955 0.68 0.836931
Target:  5'- uGAGacaACGGCGGAgauCUCCugGgcCCAGGCc -3'
miRNA:   3'- -CUCc--UGCCGUUU---GAGGugCa-GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 71262 0.68 0.836931
Target:  5'- gGGGGGCGGC---CUCUACGccuuccUCCGGaGCa -3'
miRNA:   3'- -CUCCUGCCGuuuGAGGUGC------AGGUC-CG- -5'
29131 3' -55.7 NC_006146.1 + 4315 0.68 0.836931
Target:  5'- cGGGGAUGGCAAGaUCCAgGg-CGGGUc -3'
miRNA:   3'- -CUCCUGCCGUUUgAGGUgCagGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 75271 0.68 0.84501
Target:  5'- cGGGGAUGGCcgagGAGCcgagaGCGUCCGGGa -3'
miRNA:   3'- -CUCCUGCCG----UUUGagg--UGCAGGUCCg -5'
29131 3' -55.7 NC_006146.1 + 42724 0.68 0.84501
Target:  5'- -cGGGCuGGCAg---CCGCGgaUCCGGGCg -3'
miRNA:   3'- cuCCUG-CCGUuugaGGUGC--AGGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.